Strain identifier

BacDive ID: 134176

Type strain: Yes

Species: Yeosuana aromativorans

Strain Designation: GW1-1

Strain history: K. K. Kwon and S.-J. Kim GW1-1.

NCBI tax ID(s): 288019 (species)

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General

@ref: 31697

BacDive-ID: 134176

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Yeosuana aromativorans GW1-1 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from estuarine sediment.

NCBI tax id

  • NCBI tax id: 288019
  • Matching level: species

strain history

  • @ref: 67770
  • history: K. K. Kwon and S.-J. Kim GW1-1.

doi: 10.13145/bacdive134176.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Yeosuana
  • species: Yeosuana aromativorans
  • full scientific name: Yeosuana aromativorans Kwon et al. 2006

@ref: 31697

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Yeosuana

species: Yeosuana aromativorans

strain designation: GW1-1

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
31697negative0.7-2 µm0.2-0.3 µmrod-shapedno
69480no90.751
69480negative99.886

pigmentation

  • @ref: 31697
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31697positivegrowth23-39
31697positiveoptimum33-36mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepH
31697positivegrowth05-08
31697positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 31697
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
31697no
69481no100
69480no99.996

halophily

@refsaltgrowthtested relationconcentration
31697NaClpositivegrowth0.5-3 %
31697NaClpositiveoptimum1 %

observation

@refobservation
31697aggregates in chains
67770quinones: MK-5, MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3169716449alanine+carbon source
3169722653asparagine+carbon source
3169735391aspartate+carbon source
3169728260galactose+carbon source
3169729987glutamate+carbon source
31697182404-hydroxy-L-proline+carbon source
3169726986threonine+carbon source

enzymes

  • @ref: 31697
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
31697estuarine sediment
67770Estuarine sediment of Gwangyang BayYeosu CityRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Estuary
#Environmental#Aquatic#Sediment
#Environmental#Aquatic#Brackish

taxonmaps

  • @ref: 69479
  • File name: preview.99_161697.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_107;96_9703;97_78741;98_106387;99_161697&stattab=map
  • Last taxonomy: Yeosuana aromativorans subclade
  • 16S sequence: AY682382
  • Sequence Identity:
  • Total samples: 142
  • soil counts: 2
  • aquatic counts: 127
  • animal counts: 3
  • plant counts: 10

Sequence information

16S sequences

  • @ref: 31697
  • description: Yeosuana aromativorans 16S ribosomal RNA gene, partial sequence
  • accession: AY682382
  • length: 1469
  • database: nuccore
  • NCBI tax ID: 288019

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Yeosuana aromativorans JCM 12862GCA_014646655scaffoldncbi288019
66792Yeosuana aromativorans strain JCM 12862288019.3wgspatric288019

GC content

@refGC-contentmethod
3169751.4
6777051.4high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno95.931yes
gram-positiveno98.117no
anaerobicno99.085no
aerobicyes83.806yes
halophileno91.2yes
spore-formingno95.041yes
thermophileno95.041yes
glucose-utilyes85.608no
motileno94.009yes
glucose-fermentno86.822no

External links

@ref: 31697

culture collection no.: KCCM 42019, JCM 12862, CIP 109255, NCIMB 14311

straininfo link

  • @ref: 91774
  • straininfo: 291018

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16585684Yeosuana aromativorans gen. nov., sp. nov., a mesophilic marine bacterium belonging to the family Flavobacteriaceae, isolated from estuarine sediment of the South Sea, Korea.Kwon KK, Lee HS, Jung HB, Kang JH, Kim SJInt J Syst Evol Microbiol10.1099/ijs.0.64073-02006Benzo(a)pyrene/*metabolism, Flavobacteriaceae/*classification/genetics/isolation & purification/physiology, Geologic Sediments/*microbiology, Korea, Molecular Sequence Data, RNA, Ribosomal, 16S/analysis/genetics, Seawater/*microbiologyGenetics
Phylogeny33074085Yeosuana marina sp. nov., isolated from shallow-sea hydrothermal systems off Kueishantao Island.Zhang Q, Lin D, Ye J, Lin TH, Li C, Lin H, Sun X, Tang KInt J Syst Evol Microbiol10.1099/ijsem.0.0045252020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/chemistry/*classification/genetics, Hydrothermal Vents/*microbiology, Islands, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Species SpecificityTranscriptome
Phylogeny34323679Mariniflexile maritimum sp. nov., isolated from seawater of the South Sea in the Republic of Korea.Ko SR, Le VV, Jin L, Lee SA, Ahn CY, Oh HMInt J Syst Evol Microbiol10.1099/ijsem.0.0049252021Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Fatty Acids/chemistry, Flavobacteriaceae, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Seawater, Sequence Analysis, DNATranscriptome
Phylogeny34405260Snuella sedimenti sp. nov., isolated from marine sediment.Kim JH, Weerawongwiwat V, Yoon JH, Lee JS, Sukhoom A, Kim WArch Microbiol10.1007/s00203-021-02528-82021Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae, *Geologic Sediments, Phylogeny, RNA, Ribosomal, 16S/genetics, *Seawater, Sequence Analysis, DNA, Vitamin K 2Transcriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31697Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172797428776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
91774Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID291018.1