Name: Yeosuana aromativorans GW1-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134176

Type strain:

Species: Yeosuana aromativorans

Strain Designation: GW1-1

Culture col. no.: KCCM 42019, JCM 12862, CIP 109255, NCIMB 14311

Strain history: K. K. Kwon and S.-J. Kim GW1-1.

NCBI tax ID(s): 288019 (species)

SI-ID 291018

JCM 12862, CIP 109255

Special Collections

Section

Yeosuana aromativorans GW1-1 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from estuarine sediment.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Yeosuana*
	Species	**Yeosuana aromativorans**
	Full Scientific Name (LPSN)	Yeosuana aromativorans Kwon et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31697]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98

[Ref.: #31697]	Cell length	0.7-2 µm

[Ref.: #31697]	Cell width	0.2-0.3 µm

[Ref.: #31697]	Cell shape	rod-shaped

[Ref.: #31697]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %94

[Ref.: #31697]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31697]	growth	23-39 °C
[Ref.: #31697]	optimum	33-36 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #31697]			optimum	7
[Ref.: #31697]			growth	05-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31697]

Oxygen tolerance

aerobe

[Ref.: #31697]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %91.975
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31697]		NaCl		growth	0.5-3	%
[Ref.: #31697]		NaCl		optimum	1	%

[Ref.: #31697]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-5, MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31697]	4-hydroxy-L-proline ChEBI	+	carbon source
[Ref.: #31697]	alanine ChEBI	+	carbon source
[Ref.: #31697]	asparagine ChEBI	+	carbon source
[Ref.: #31697]	aspartate ChEBI	+	carbon source
[Ref.: #31697]	galactose ChEBI	+	carbon source
[Ref.: #31697]	glutamate ChEBI	+	carbon source
[Ref.: #31697]	threonine ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31697]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31697]	Sample type/isolated from	estuarine sediment

[Ref.: #67770]	Sample type/isolated from	Estuarine sediment of Gwangyang Bay
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yeosu City
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Estuary
#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Brackish

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY682382 (>99% sequence identity) for Yeosuana aromativorans subclade from Microbeatlas

Aquatic Samples	127
Soil Samples	2
Animal Samples	3
Plant Samples	10
Total Samples	142

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31697]	Yeosuana aromativorans 16S ribosomal RNA gene, partial sequence	AY682382	1469	GenBank ENA	288019 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Yeosuana aromativorans JCM 12862	GCA_014646655	scaffold	GenBank ENA	288019 tax ID	*
[Ref.: #66792]	Yeosuana aromativorans strain JCM 12862	288019.3	wgs	PATRIC	288019 tax ID	*

[Ref.: #31697]	GC-content	51.4 mol%
[Ref.: #67770]	GC-content	51.4 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Yeosuana aromativorans JCM 12862 NCBI: GCA_014646655.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Yeosuana aromativorans JCM 12862 NCBI: GCA_014646655.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.86	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	78.92	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.975	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.954	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	94	yes

Availability in culture collections External links

[Ref.: #31697]

Culture collection no.

KCCM 42019, JCM 12862, CIP 109255, NCIMB 14311

[Ref.: #91774]

SI-ID 291018

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mariniflexile maritimum sp. nov., isolated from seawater of the South Sea in the Republic of Korea.	Ko SR, Le VV, Jin L, Lee SA, Ahn CY, Oh HM	Int J Syst Evol Microbiol	10.1099/ijsem.0.004925	2021	*
Phylogeny	Yeosuana aromativorans gen. nov., sp. nov., a mesophilic marine bacterium belonging to the family Flavobacteriaceae, isolated from estuarine sediment of the South Sea, Korea.	Kwon KK, Lee HS, Jung HB, Kang JH, Kim SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64073-0	2006	*
Phylogeny	Snuella sedimenti sp. nov., isolated from marine sediment.	Kim JH, Weerawongwiwat V, Yoon JH, Lee JS, Sukhoom A, Kim W	Arch Microbiol	10.1007/s00203-021-02528-8	2021	*
Phylogeny	Yeosuana marina sp. nov., isolated from shallow-sea hydrothermal systems off Kueishantao Island.	Zhang Q, Lin D, Ye J, Lin TH, Li C, Lin H, Sun X, Tang K	Int J Syst Evol Microbiol	10.1099/ijsem.0.004525	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31697

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27974 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91774

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID291018.1 )

#27974

IJSEM 727 2006 ( DOI 10.1099/ijs.0.64073-0 , PubMed 16585684 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Yeosuana aromativorans in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Yeosuana aromativorans JCM 12862

Yeosuana aromativorans JCM 12862

Change proposal

Change proposal