Strain identifier

BacDive ID: 134133

Type strain: Yes

Species: Bizionia algoritergicola

Strain Designation: APA1-, APA-1

Strain history: CIP <- 2004, J. Bowman, Tasmania, Australia: strain APA-1

NCBI tax ID(s): 291187 (species)

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General

@ref: 31431

BacDive-ID: 134133

keywords: genome sequence, 16S sequence, Bacteria, aerobe, psychrophilic, Gram-negative, rod-shaped

description: Bizionia algoritergicola APA1- is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from Environment, Sea-ice brine.

NCBI tax id

  • NCBI tax id: 291187
  • Matching level: species

strain history

  • @ref: 116232
  • history: CIP <- 2004, J. Bowman, Tasmania, Australia: strain APA-1

doi: 10.13145/bacdive134133.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Bizionia
  • species: Bizionia algoritergicola
  • full scientific name: Bizionia algoritergicola Bowman and Nichols 2005

  • synonyms

    • @ref: 20215
    • synonym: Algorimicrobium algoritergicola

@ref: 31431

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Bizionia

species: Bizionia algoritergicola

strain designation: APA1-, APA-1

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
31431negative2 µm0.4 µmrod-shapedno
69480negative99.988
116232negativeoval-shapedno

pigmentation

  • @ref: 31431
  • production: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
34325Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
116232CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
31431positiveoptimum13psychrophilic
34325positivegrowth22psychrophilic
116232positivegrowth5-30
116232nogrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 31431
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.99

halophily

@refsaltgrowthtested relationconcentration
31431NaClpositivegrowth0.2-2 %
31431NaClpositiveoptimum0.35 %
116232NaClpositivegrowth2-6 %
116232NaClnogrowth0 %
116232NaClnogrowth8 %
116232NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
314315291gelatin+carbon source
3143127570histidine+carbon source
3143153426tween 80+carbon source
3143116199urea+carbon source
11623216947citrate-carbon source
1162324853esculin-hydrolysis
11623217632nitrate-reduction
11623216301nitrite-reduction

metabolite production

  • @ref: 116232
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11623215688acetoin-
11623217234glucose-

enzymes

@refvalueactivityec
31431alkaline phosphatase+3.1.3.1
31431catalase+1.11.1.6
31431gelatinase+
31431urease+3.5.1.5
116232oxidase-
116232beta-galactosidase-3.2.1.23
116232alcohol dehydrogenase-1.1.1.1
116232gelatinase+
116232amylase-
116232caseinase+3.4.21.50
116232catalase+1.11.1.6
116232tween esterase+
116232gamma-glutamyltransferase+2.3.2.2
116232lecithinase-
116232lipase-
116232lysine decarboxylase-4.1.1.18
116232ornithine decarboxylase-4.1.1.17
116232phenylalanine ammonia-lyase-4.3.1.24
116232protease+
116232tryptophan deaminase-
116232urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116232-+++-+++--++--------

Isolation, sampling and environmental information

isolation

  • @ref: 116232
  • sample type: Environment, Sea-ice brine
  • geographic location: Vestfold hills
  • country: Antarctica
  • origin.country: ATA
  • continent: Antarctica
  • isolation date: 1999

taxonmaps

  • @ref: 69479
  • File name: preview.99_7030.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_107;96_2813;97_3454;98_5165;99_7030&stattab=map
  • Last taxonomy: Bizionia
  • 16S sequence: AY694003
  • Sequence Identity:
  • Total samples: 760
  • soil counts: 12
  • aquatic counts: 616
  • animal counts: 125
  • plant counts: 7

Safety information

risk assessment

  • @ref: 116232
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 31431
  • description: Bizionia algoritergicola strain APA-1 16S ribosomal RNA gene, partial sequence
  • accession: AY694003
  • length: 1399
  • database: nuccore
  • NCBI tax ID: 291187

Genome sequences

  • @ref: 66792
  • description: Bizionia algoritergicola strain APA-1
  • accession: 291187.4
  • assembly level: wgs
  • database: patric
  • NCBI tax ID: 291187

GC content

  • @ref: 31431
  • GC-content: 45

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.124yes
anaerobicno99.492no
halophileno75.412no
spore-formingno96.221no
glucose-utilyes83.316no
motileno88.703yes
flagellatedno95.547yes
aerobicyes93.817yes
thermophileno99.566yes
glucose-fermentno93.845no

External links

@ref: 31431

culture collection no.: ACAM 1056, CIP 108533

straininfo link

  • @ref: 91734
  • straininfo: 265385

literature

  • topic: Phylogeny
  • Pubmed-ID: 16014468
  • title: Novel members of the family Flavobacteriaceae from Antarctic maritime habitats including Subsaximicrobium wynnwilliamsii gen. nov., sp. nov., Subsaximicrobium saxinquilinus sp. nov., Subsaxibacter broadyi gen. nov., sp. nov., Lacinutrix copepodicola gen. nov., sp. nov., and novel species of the genera Bizionia, Gelidibacter and Gillisia.
  • authors: Bowman JP, Nichols DS
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.63527-0
  • year: 2005
  • mesh: Amphipoda/microbiology, Animals, Antarctic Regions, Bacterial Typing Techniques, Copepoda/microbiology, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, *Environment, Eukaryota/microbiology, Flavobacteriaceae/*classification/genetics/isolation & purification/physiology, Genes, rRNA, Genotype, Ice Cover/microbiology, Molecular Sequence Data, Phenotype, Phylogeny, Quartz, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Species Specificity
  • topic2: Genetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31431Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172773728776041
34325Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6166
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
91734Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID265385.1
116232Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108533Collection of Institut Pasteur (CIP 108533)