Name: Bizionia algoritergicola APA1-
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134133

Type strain:

Species: Bizionia algoritergicola

Strain Designation: APA1-, APA-1

Culture col. no.: ACAM 1056, CIP 108533

Strain history: CIP <- 2004, J. Bowman, Tasmania, Australia: strain APA-1

NCBI tax ID(s): 291187 (species)

SI-ID 265385

CIP 108533

Section

Bizionia algoritergicola APA1- is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from Environment, Sea-ice brine.

Gram-negative
rod-shaped
aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Bizionia*
	Species	**Bizionia algoritergicola**
	Full Scientific Name (LPSN)	Bizionia algoritergicola Bowman and Nichols 2005

Synonym

"Algorimicrobium algoritergicola"

Information on morphological and physiological properties Morphology

[Ref.: #31431]	Gram stain	negative
[Ref.: #116232]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.988

[Ref.: #31431]	Cell length	2 µm

[Ref.: #31431]	Cell width	0.4 µm

[Ref.: #31431]	Cell shape	rod-shaped
[Ref.: #116232]	Cell shape	oval-shaped

[Ref.: #31431]	Motility	no
[Ref.: #116232]	Motility	no

[Ref.: #31431]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #34325]

Culture medium

Marine agar (MA)

[Ref.: #34325]

Culture medium growth

[Ref.: #34325]

Culture medium composition

expand / minimize

[Ref.: #116232]

Culture medium

CIP Medium 13

[Ref.: #116232]

Culture medium growth

[Ref.: #116232]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #31431]		optimum	13 °C
[Ref.: #34325]		growth	22 °C
[Ref.: #116232]		growth	5-30 °C
[Ref.: #116232]	no	growth	37 °C

[Ref.: #31431]	Temperature range	psychrophilic
[Ref.: #34325]	Temperature range	psychrophilic
[Ref.: #116232]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31431]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.99

	Salt	Tested relation		Salt conc.
[Ref.: #31431]	NaCl		growth	0.2-2	%
[Ref.: #31431]	NaCl		optimum	0.35	%
[Ref.: #116232]	NaCl		growth	2-6	%
[Ref.: #116232]	NaCl	no	growth	0	%
[Ref.: #116232]	NaCl	no	growth	8	%
[Ref.: #116232]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #116232]	citrate ChEBI	-	carbon source
[Ref.: #116232]	esculin ChEBI	-	hydrolysis
[Ref.: #31431]	gelatin ChEBI	+	carbon source
[Ref.: #31431]	histidine ChEBI	+	carbon source
[Ref.: #116232]	nitrate ChEBI	-	reduction
[Ref.: #116232]	nitrite ChEBI	-	reduction
[Ref.: #31431]	tween 80 ChEBI	+	carbon source
[Ref.: #31431]	urea ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #116232]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #116232]		acetoin ChEBI	-
[Ref.: #116232]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #116232]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #31431]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #116232]	amylase	-
[Ref.: #116232]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116232]	caseinase	+	3.4.21.50
[Ref.: #31431]	catalase	+	1.11.1.6
[Ref.: #116232]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #116232]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #31431]	gelatinase	+
[Ref.: #116232]	gelatinase	+
[Ref.: #116232]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #116232]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #116232]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116232]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116232]	oxidase	-
[Ref.: #116232]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #116232]	protease	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #116232]	tryptophan deaminase	-
[Ref.: #116232]	tween esterase	+
[Ref.: #31431]	urease	+	3.5.1.5
[Ref.: #116232]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116232]	11261	-	+	+	+	-	+	+	+	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #116232]	Sample type/isolated from	Environment, Sea-ice brine
[Ref.: #116232]	Geographic location (country and/or sea, region)	Vestfold hills
[Ref.: #116232]	Country	Antarctica
[Ref.: #116232]	Country ISO 3 Code	ATA
[Ref.: #116232]	Continent	Antarctica
[Ref.: #116232]	Isolation date	1999
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AY694003 (>99% sequence identity) for Bizionia from Microbeatlas

Aquatic Samples	616
Soil Samples	12
Animal Samples	125
Plant Samples	7
Total Samples	760

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #116232]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31431]	Bizionia algoritergicola strain APA-1 16S ribosomal RNA gene, partial sequence	AY694003	1399	GenBank	291187 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bizionia algoritergicola strain APA-1	291187.4	wgs	PATRIC	291187 tax ID	*

[Ref.: #31431]

GC-content

45 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bizionia algoritergicola strain APA-1 PATRIC: 291187.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bizionia algoritergicola strain APA-1 PATRIC: 291187.4
[Ref.: #69480]	gram-positive	no	98.124	yes
[Ref.: #69480]	anaerobic	no	99.492	no
[Ref.: #69480]	halophile	no	75.412	no
[Ref.: #69480]	spore-forming	no	96.221	no
[Ref.: #69480]	glucose-util	yes	83.316	no
[Ref.: #69480]	motile	no	88.703	yes
[Ref.: #69480]	flagellated	no	95.547	yes
[Ref.: #69480]	aerobic	yes	93.817	yes
[Ref.: #69480]	thermophile	no	99.566	yes
[Ref.: #69480]	glucose-ferment	no	93.845	no

Availability in culture collections External links

[Ref.: #31431]

Culture collection no.

ACAM 1056, CIP 108533

[Ref.: #91734]

SI-ID 265385

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Novel members of the family Flavobacteriaceae from Antarctic maritime habitats including Subsaximicrobium wynnwilliamsii gen. nov., sp. nov., Subsaximicrobium saxinquilinus sp. nov., Subsaxibacter broadyi gen. nov., sp. nov., Lacinutrix copepodicola gen. nov., sp. nov., and novel species of the genera Bizionia, Gelidibacter and Gillisia.	Bowman JP, Nichols DS	Int J Syst Evol Microbiol	10.1099/ijs.0.63527-0	2005	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31431

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27737 (see below)

#34325 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91734

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID265385.1 )

#116232 Collection of Institut Pasteur ; Curators of the CIP; CIP 108533

#27737

IJSEM 1471 2005 ( DOI 10.1099/ijs.0.63527-0 , PubMed 16014468 )

* These data were automatically processed and therefore are not curated

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Bizionia algoritergicola strain APA-1

Bizionia algoritergicola strain APA-1

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