Strain identifier

BacDive ID: 134057

Type strain: Yes

Species: Lacibacter daechungensis

Strain Designation: H32-4

Strain history: <- Long Jin, KRIBB

NCBI tax ID(s): 1319580 (species)

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General

@ref: 31151

BacDive-ID: 134057

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Lacibacter daechungensis H32-4 is an aerobe, Gram-negative, motile bacterium that was isolated from freshwater .

NCBI tax id

  • NCBI tax id: 1319580
  • Matching level: species

strain history

@refhistory
67770L. Jin H32-4.
67771<- Long Jin, KRIBB

doi: 10.13145/bacdive134057.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Chitinophagia
  • order: Chitinophagales
  • family: Chitinophagaceae
  • genus: Lacibacter
  • species: Lacibacter daechungensis
  • full scientific name: Lacibacter daechungensis Jin et al. 2013

@ref: 31151

domain: Bacteria

phylum: Bacteroidetes

class: Sphingobacteriia

order: Chitinophagales

family: Chitinophagaceae

genus: Lacibacter

species: Lacibacter daechungensis

strain designation: H32-4

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityflagellum arrangement
31151negativerod-shapedyesgliding
67771rod-shapedyes
67771negative

pigmentation

  • @ref: 31151
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31151positivegrowth15-37
31151positiveoptimum30mesophilic
67770positivegrowth30mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepH
31151positivegrowth05-08
31151positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31151aerobe
67771aerobe

spore formation

@refspore formation
31151no
67771no

halophily

  • @ref: 31151
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-1 %

observation

  • @ref: 67770
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
31151581435-dehydro-D-gluconate+carbon source
3115117306maltose+carbon source
3115127082trehalose+carbon source
311514853esculin+hydrolysis

enzymes

@refvalueactivityec
31151acid phosphatase+3.1.3.2
31151alkaline phosphatase+3.1.3.1
31151gelatinase+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
31151freshwater (river, lake, pond)
67770Deep freshwater of Daechung reservoirDaejeonRepublic of KoreaKORAsia
67771From 32m deep freshwaterDaechung Reservoir, DaejeonRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Freshwater
#Environmental#Aquatic#Lake (large)
#Environmental#Aquatic#Pond (small)
#Environmental#Aquatic#River (Creek)

taxonmaps

  • @ref: 69479
  • File name: preview.99_98605.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_185;96_9072;97_10911;98_13405;99_98605&stattab=map
  • Last taxonomy: Lacibacter
  • 16S sequence: KC759435
  • Sequence Identity:
  • Total samples: 1385
  • soil counts: 146
  • aquatic counts: 1057
  • animal counts: 143
  • plant counts: 39

Sequence information

16S sequences

  • @ref: 31151
  • description: Lacibacter daechungensis strain H32-4 16S ribosomal RNA gene, partial sequence
  • accession: KC759435
  • length: 1397
  • database: nuccore
  • NCBI tax ID: 1319580

GC content

@refGC-contentmethod
3115145.7
6777145.7high performance liquid chromatography (HPLC)

External links

@ref: 31151

culture collection no.: KCTC 32395, JCM 19172

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23859945Lacibacter daechungensis sp. nov., isolated from deep freshwater of a reservoir.Jin L, Shin SY, Lee HG, Ahn CY, Oh HMInt J Syst Evol Microbiol10.1099/ijs.0.053702-02013Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fresh Water/*microbiology, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny27902234Lacibacter nakdongensis sp. nov., isolated from river sediment.Han JH, Baek K, Lee MHInt J Syst Evol Microbiol10.1099/ijsem.0.0016312017Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rivers/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny31851601Lacibacter luteus sp. nov., isolated from a freshwater river.Sheu SY, Chen TY, Kwon SW, Chen WMInt J Syst Evol Microbiol10.1099/ijsem.0.0039262020Bacterial Typing Techniques, Bacteroidetes/*classification/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Sequence Analysis, DNA, Taiwan, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31151Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172747928776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/