Lacibacter daechungensis (KCTC 32395, JCM 19172, H32-4)

Name: Lacibacter daechungensis (KCTC 32395, JCM 19172, H32-4)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134057

Type strain

Strain Designation H32-4

Culture col. no. KCTC 32395 JCM 19172 H32-4

NCBI tax ID(s) 1319580

Special Collections JCM KCTC Literature strains

Links

Lacibacter daechungensis H32-4 is an aerobe, Gram-negative, motile prokaryote that was isolated from freshwater .

Gram-negative motile rod-shaped aerobe 16S sequence

Name and taxonomic classification

SI-ID 26618

KCTC 32395,JCM 19172

@ref 20215

Last LPSN update 2025-12-16 10:01:57

Domain Pseudomonadati

Phylum Bacteroidota

Class Chitinophagia

Order Chitinophagales

Family Chitinophagaceae

Genus Lacibacter

Species Lacibacter daechungensis

Full scientific name Lacibacter daechungensis Jin et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Flagellum arrangement
31151	negative	rod-shaped	gliding
67771		rod-shaped
67771	negative

Pigmentation

31151

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
31151	positive	growth	15-37
31151	positive	optimum	30	mesophilic
67770	positive	growth	30	mesophilic
67771	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH
31151	positive	optimum	7
31151	positive	growth	05-08

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
31151	aerobe
67771	aerobe

Spore formation

@ref	Spore formation
31151
67771

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31151	NaCl	positive	growth	0-1 %

Observation

67770

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31151	58143 ChEBI	5-dehydro-D-gluconate	+	carbon source
31151	4853 ChEBI	esculin	+	hydrolysis
31151	17306 ChEBI	maltose	+	carbon source
31151	27082 ChEBI	trehalose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31151	acid phosphatase	+	3.1.3.2
31151	alkaline phosphatase	+	3.1.3.1
31151	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#River (Creek)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
31151	freshwater (river, lake, pond)
67770	Deep freshwater of Daechung reservoir	Daejeon	Republic of Korea	KOR	Asia
67771	From 32m deep freshwater	Daechung Reservoir, Daejeon	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence KC759435 (>99% sequence identity) for Lacibacter from Microbeatlas

Aquatic Samples	1057
Soil Samples	146
Animal Samples	143
Plant Samples	39
Total Samples	1385

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31151	Lacibacter daechungensis 16S ribosomal RNA gene, partial sequence	KC759435	1397		1319580

GC content

@ref	GC-content (mol%)	Method
31151	45.7
67771	45.7	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lacibacter luteus sp. nov., isolated from a freshwater river.	Sheu SY, Chen TY, Kwon SW, Chen WM	Int J Syst Evol Microbiol	10.1099/ijsem.0.003926	2020
Phylogeny	Lacibacter nakdongensis sp. nov., isolated from river sediment.	Han JH, Baek K, Lee MH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001631	2017
Phylogeny	Lacibacter daechungensis sp. nov., isolated from deep freshwater of a reservoir.	Jin L, Shin SY, Lee HG, Ahn CY, Oh HM	Int J Syst Evol Microbiol	10.1099/ijs.0.053702-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27479	IJSEM 4519 2013 ( DOI 10.1099/ijs.0.053702-0 , PubMed 23859945 )
#31151	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27479
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lacibacter daechungensis (KCTC 32395, JCM 19172, H32-4)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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