Strain identifier
BacDive ID: 134017
Type strain: 
Species: Gluconacetobacter aggeris
Strain Designation: T6203-4-1a
Strain history: J. Sugiyama T6203-4-1a.
NCBI tax ID(s): 1286186 (species)
version 8.1 (current version)
General
@ref: 31071
BacDive-ID: 134017
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped
description: Gluconacetobacter aggeris T6203-4-1a is an aerobe, Gram-negative, motile bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1286186
- Matching level: species
strain history
- @ref: 67770
- history: J. Sugiyama T6203-4-1a.
doi: 10.13145/bacdive134017.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Gluconacetobacter
- species: Gluconacetobacter aggeris
- full scientific name: Gluconacetobacter aggeris corrig. Nishijima et al. 2013
synonyms
- @ref: 20215
- synonym: Gluconoacetobacter aggeris
@ref: 31071
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Acetobacteraceae
genus: Gluconacetobacter
species: Gluconacetobacter aggeris
strain designation: T6203-4-1a
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 31071 | negative | 1.6 µm | 0.75 µm | rod-shaped | yes | |
| 69480 | yes | 95.75 | ||||
| 69480 | negative | 99.998 |
pigmentation
- @ref: 31071
- production: no
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 31071 | positive | growth | 15-30 | |
| 31071 | positive | optimum | 25 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
culture pH
- @ref: 31071
- ability: positive
- type: growth
- pH: 3.0-6.8
- PH range: acidophile
Physiology and metabolism
oxygen tolerance
- @ref: 31071
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 31071 | no | |
| 69481 | no | 100 |
| 69480 | no | 99.995 |
observation
- @ref: 67770
- observation: quinones: Q-10, Q-9
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31071 | 30089 | acetate | + | carbon source |
| 31071 | 16236 | ethanol | + | carbon source |
| 31071 | 28757 | fructose | + | carbon source |
| 31071 | 24265 | gluconate | + | carbon source |
| 31071 | 17234 | glucose | + | carbon source |
| 31071 | 24996 | lactate | + | carbon source |
| 31071 | 29864 | mannitol | + | carbon source |
| 31071 | 33942 | ribose | + | carbon source |
| 31071 | 17992 | sucrose | + | carbon source |
enzymes
- @ref: 31071
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 31071 | soil | ||||
| 67770 | Soil taken 5 cm below the surface in a bamboo grove of the burial mound of the Takamatsuzuka Tumulus | Asuka Village, Nara Pref. | Japan | JPN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_57177.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_64;97_2865;98_3566;99_57177&stattab=map
- Last taxonomy: Gluconacetobacter
- 16S sequence: AB778526
- Sequence Identity:
- Total samples: 1490
- soil counts: 360
- aquatic counts: 144
- animal counts: 740
- plant counts: 246
Sequence information
16S sequences
- @ref: 31071
- description: Gluconacetobacter aggeris gene for 16S ribosomal RNA, partial sequence, strain: T6203-4-1a
- accession: AB778526
- length: 1414
- database: nuccore
- NCBI tax ID: 1286186
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Gluconacetobacter aggeris strain LMG 27801 | 1286186.4 | wgs | patric | 1286186 |
| 66792 | Gluconacetobacter aggeris LMG 27801 | 2910459275 | draft | img | 1286186 |
| 67770 | Gluconacetobacter aggeris LMG 27801 | GCA_014174395 | contig | ncbi | 1286186 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 31071 | 65.4 | |
| 67770 | 65.4 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 85.732 | yes |
| gram-positive | no | 98.07 | no |
| anaerobic | no | 98.703 | yes |
| aerobic | yes | 83.726 | yes |
| halophile | no | 92.969 | no |
| spore-forming | no | 95.713 | no |
| thermophile | no | 96.269 | yes |
| glucose-util | yes | 90.198 | yes |
| flagellated | no | 81.714 | no |
| glucose-ferment | no | 90.866 | no |
External links
@ref: 31071
culture collection no.: JCM 19092, NCIMB 14860, LMG 27801
straininfo link
| @ref | straininfo |
|---|---|
| 91669 | 388746 |
| 91670 | 390481 |
literature
- topic: Phylogeny
- Pubmed-ID: 23793855
- title: Gluconacetobacter tumulisoli sp. nov., Gluconacetobacter takamatsuzukensis sp. nov. and Gluconacetobacter aggeris sp. nov., isolated from Takamatsuzuka Tumulus samples before and during the dismantling work in 2007.
- authors: Nishijima M, Tazato N, Handa Y, Tomita J, Kigawa R, Sano C, Sugiyama J
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.051292-0
- year: 2013
- mesh: Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gluconacetobacter/*classification/genetics/isolation & purification, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/analogs & derivatives/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 31071 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27400 | 28776041 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | ||
| 91669 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID388746.1 | ||
| 91670 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID390481.1 |