Gluconacetobacter aggeris (JCM 19092, NCIMB 14860, T6203-4-1a)

Name: Gluconacetobacter aggeris (JCM 19092, NCIMB 14860, T6203-4-1a)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134017

Type strain

Strain Designation T6203-4-1a

Culture col. no. JCM 19092 NCIMB 14860 T6203-4-1a LMG 27801

NCBI tax ID(s) 1286186

Special Collections JCM Literature strains

Links

Gluconacetobacter aggeris T6203-4-1a is an aerobe, Gram-negative, motile prokaryote that was isolated from soil.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 388746

NCIMB 14860,JCM 19092

@ref 20215

Last LPSN update 2025-12-16 10:01:56

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Acetobacteraceae

Genus Gluconacetobacter

Species Gluconacetobacter aggeris

Full scientific name Gluconacetobacter aggeris corrig. Nishijima et al. 2013

Synonyms (1)

Gluconoacetobacter aggeris

BacDive ID	Other strains from **Gluconacetobacter aggeris** (1)	Type strain
162402	G. aggeris JCM 19093

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
31071	negative	1.6 µm	0.75 µm	rod-shaped
125439	negative
125438	negative

Pigmentation

31071

Productionno

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
31071	positive	growth	15-30
31071	positive	optimum	25
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
31071	positive	growth	3.0-6.8	acidophile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
31071	aerobe
125439	obligate aerobe

Spore formation

@ref	Spore formation
31071
125439

Observation

67770

Observationquinones: Q-10, Q-9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31071	30089 ChEBI	acetate	+	carbon source
31071	16236 ChEBI	ethanol	+	carbon source
31071	28757 ChEBI	fructose	+	carbon source
31071	24265 ChEBI	gluconate	+	carbon source
31071	17234 ChEBI	glucose	+	carbon source
31071	24996 ChEBI	lactate	+	carbon source
31071	29864 ChEBI	mannitol	+	carbon source
31071	33942 ChEBI	ribose	+	carbon source
31071	17992 ChEBI	sucrose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31071	catalase	+	1.11.1.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type
31071	soil
67770	Soil taken 5 cm below the surface in a bamboo grove of the burial mound of the Takamatsuzuka Tumulus

Taxonmaps

69479

Global distribution of 16S sequence AB778526 (>99% sequence identity) for Gluconacetobacter from Microbeatlas

Aquatic Samples	144
Soil Samples	360
Animal Samples	740
Plant Samples	246
Total Samples	1490

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1417439v1 assembly for Gluconacetobacter aggeris LMG 27801	contig	GCA_014174395	1286186.4	2910459275	1286186	58.31

Genome browser: GCA_014174395

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31071	Gluconacetobacter aggeris gene for 16S ribosomal RNA, partial sequence, strain: T6203-4-1a	AB778526	1414		1286186

GC content

@ref	GC-content (mol%)
31071	65.4
67770	65.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Gluconacetobacter aggeris LMG 27801
NCBI: GCA_014174395

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.70	no
125439	motility	BacteriaNetⓘ	yes	82.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Gluconacetobacter aggeris strain LMG 27801
PATRIC: 1286186.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.33	yes
125438	anaerobic	anaerobicⓘ	no	90.25	no
125438	spore-forming	spore-formingⓘ	no	85.76	no
125438	aerobic	aerobicⓘ	yes	83.97	yes
125438	thermophilic	thermophileⓘ	no	95.69	yes
125438	flagellated	motile2+ⓘ	yes	66.73	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gluconacetobacter tumulisoli sp. nov., Gluconacetobacter takamatsuzukensis sp. nov. and Gluconacetobacter aggeris sp. nov., isolated from Takamatsuzuka Tumulus samples before and during the dismantling work in 2007.	Nishijima M, Tazato N, Handa Y, Tomita J, Kigawa R, Sano C, Sugiyama J	Int J Syst Evol Microbiol	10.1099/ijs.0.051292-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#31071	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27400 (see below)
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Gluconacetobacter aggeris (JCM 19092, NCIMB 14860, T6203-4-1a)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_014174395

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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