Strain identifier

BacDive ID: 134012

Type strain: Yes

Species: Halolamina salina

Strain Designation: GCMCC1.12285, WSY15-H3

Strain history: W. Zhang WSY15-H3.

NCBI tax ID(s): 1220023 (species)

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General

@ref: 31055

BacDive-ID: 134012

keywords: 16S sequence, Archaea, aerobe, Gram-negative

description: Halolamina salina GCMCC1.12285 is an aerobe, Gram-negative archaeon that was isolated from salt mine.

NCBI tax id

  • NCBI tax id: 1220023
  • Matching level: species

strain history

  • @ref: 67770
  • history: W. Zhang WSY15-H3.

doi: 10.13145/bacdive134012.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Halobacteria
  • order: Haloferacales
  • family: Halorubraceae
  • genus: Halolamina
  • species: Halolamina salina
  • full scientific name: Halolamina salina Zhang et al. 2013

@ref: 31055

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Haloferacales

family: Halorubraceae

genus: Halolamina

species: Halolamina salina

strain designation: GCMCC1.12285, WSY15-H3

type strain: yes

Morphology

cell morphology

  • @ref: 31055
  • gram stain: negative
  • motility: no

pigmentation

  • @ref: 31055
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31055positivegrowth20-50
31055positiveoptimum39.5mesophilic
67770positivegrowth37mesophilic

culture pH

@refabilitytypepH
31055positivegrowth6.0-7.5
31055positiveoptimum6.5

Physiology and metabolism

oxygen tolerance

  • @ref: 31055
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
31055NaClpositivegrowth11.02-31.32 %
31055NaClpositiveoptimum19.72 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3105530089acetate+carbon source
3105529016arginine+carbon source
3105528260galactose+carbon source
3105517234glucose+carbon source
3105529987glutamate+carbon source
3105515361pyruvate+carbon source
3105533942ribose+carbon source
3105517992sucrose+carbon source
310554853esculin+hydrolysis

enzymes

@refvalueactivityec
31055acid phosphatase+3.1.3.2
31055catalase+1.11.1.6
31055cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
31055salt mine
67770Salt mine in Wensu countyXinjiangChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Other#Mine
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_191664.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17875;96_68806;97_89523;98_121804;99_191664&stattab=map
  • Last taxonomy: Halolamina salina
  • 16S sequence: JX192605
  • Sequence Identity:
  • Total samples: 1
  • animal counts: 1

Sequence information

16S sequences

  • @ref: 31055
  • description: Halolamina salina strain WSY15-H3 16S ribosomal RNA gene, partial sequence
  • accession: JX192605
  • length: 1472
  • database: nuccore
  • NCBI tax ID: 1220023

GC content

@refGC-contentmethod
3105566.2
6777066.2high performance liquid chromatography (HPLC)

External links

@ref: 31055

culture collection no.: JCM 18549, CGMCC 1.12285

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23832972Halolamina salifodinae sp. nov. and Halolamina salina sp. nov., two extremely halophilic archaea isolated from a salt mine.Zhang WY, Huo YY, Zhang XQ, Zhu XF, Wu MInt J Syst Evol Microbiol10.1099/ijs.0.050864-02013Base Composition, China, DNA, Archaeal/genetics, Glycolipids/chemistry, Halobacteriaceae/*classification/genetics/isolation & purification, *Mining, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylglycerols/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium ChlorideGenetics
Phylogeny24633912Halolamina rubra sp. nov., a haloarchaeon isolated from non-purified solar salt.Cha IT, Yim KJ, Song HS, Lee HW, Hyun DW, Kim KN, Choi JS, Kim D, Lee SJ, Seo MJ, Choi HJ, Bae JW, Rhee SK, Roh SW, Nam YDAntonie Van Leeuwenhoek10.1007/s10482-014-0145-02014Base Composition, Cluster Analysis, DNA, Archaeal/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Environmental Microbiology, Glycolipids/analysis, Halobacteriaceae/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Salts/*metabolism, Sequence Analysis, DNAGenetics
Phylogeny25920722Halolamina sediminis sp. nov., an extremely halophilic archaeon isolated from solar salt.Koh HW, Song HS, Song U, Yim KJ, Roh SW, Park SJInt J Syst Evol Microbiol10.1099/ijs.0.0002872015Base Composition, DNA, Archaeal/genetics, Glycolipids/chemistry, Halobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Salts, Sequence Analysis, DNA, *Sodium ChlorideGenetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31055Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172738528776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/