Halolamina salina (JCM 18549, GCMCC1.12285, WSY15-H3)

Name: Halolamina salina (JCM 18549, GCMCC1.12285, WSY15-H3)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134012

Type strain

Strain Designation GCMCC1.12285, WSY15-H3

Culture col. no. JCM 18549 GCMCC1.12285 WSY15-H3 CGMCC 1.12285

NCBI tax ID(s) 1220023

Special Collections JCM Literature strains

History JCM <-- W. Zhang WSY15-H3.

Links

Halolamina salina GCMCC1.12285 is an aerobe, Gram-negative archaeon that was isolated from salt mine.

Gram-negative aerobe genome sequence 16S sequence Archaea

Name and taxonomic classification

SI-ID 132961

JCM 18549

@ref 20215

Last LPSN update 2026-05-29 08:38:14

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Haloferacaceae

Genus Halolamina

Species Halolamina salina

Full scientific name Halolamina salina Zhang et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Motility
31055	negative

Pigmentation

31055

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
31055	positive	growth	20-50
31055	positive	optimum	39.5
67770	positive	growth	37

Culture pH

@ref	Ability	Type	PH
31055	positive	optimum	6.5
31055	positive	growth	6.0-7.5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31055	aerobe
125439	facultative anaerobe	92.591

Spore formation

@ref	Spore formation	Confidence
125439		96.775

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31055	NaCl	positive	growth	11.02-31.32 %
31055	NaCl	positive	optimum	19.72 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31055	30089 ChEBI	acetate	+	carbon source
31055	29016 ChEBI	arginine	+	carbon source
31055	4853 ChEBI	esculin	+	hydrolysis
31055	28260 ChEBI	galactose	+	carbon source
31055	17234 ChEBI	glucose	+	carbon source
31055	29987 ChEBI	glutamate	+	carbon source
31055	15361 ChEBI	pyruvate	+	carbon source
31055	33942 ChEBI	ribose	+	carbon source
31055	17992 ChEBI	sucrose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31055	acid phosphatase	+	3.1.3.2
31055	catalase	+	1.11.1.6
31055	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Other	#Mine
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
31055	salt mine
67770	Salt mine in Wensu county	Xinjiang	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence JX192605 (>99% sequence identity) for Halolamina salina from Microbeatlas

Aquatic Samples	0
Soil Samples	0
Animal Samples	1
Plant Samples	0
Total Samples	1

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4266226v1 assembly for Halolamina salina CGMCC 1.12285	scaffold	GCA_042662265	1220023	0
124043	ASM4267800v1 assembly for Halolamina salina CGMCC 1.12285	scaffold	GCA_042678005	1220023	0

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31055	Halolamina salina strain WSY15-H3 16S ribosomal RNA gene, partial sequence	JX192605	1472		1220023
124043	Halolamina salina gene for 16S ribosomal RNA, partial sequence, strain: JCM 18549.	AB935418	1473		1220023

GC content

@ref	GC-content (mol%)	Method
31055	66.2
67770	66.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4266226v1 assembly for Halolamina salina CGMCC 1.12285
NCBI: GCA_042662265

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	92.59	no
125439	gram_stain	BacteriaNetⓘ	negative	73.05	no
125439	motility	BacteriaNetⓘ	yes	54.42	no
125439	spore_formation	BacteriaNetⓘ	no	96.78	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halolamina sediminis sp. nov., an extremely halophilic archaeon isolated from solar salt.	Koh HW, Song HS, Song U, Yim KJ, Roh SW, Park SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.000287	2015
Phylogeny	Halolamina rubra sp. nov., a haloarchaeon isolated from non-purified solar salt.	Cha IT, Yim KJ, Song HS, Lee HW, Hyun DW, Kim KN, Choi JS, Kim D, Lee SJ, Seo MJ, Choi HJ, Bae JW, Rhee SK, Roh SW, Nam YD	Antonie Van Leeuwenhoek	10.1007/s10482-014-0145-0	2014
Phylogeny	Halolamina salifodinae sp. nov. and Halolamina salina sp. nov., two extremely halophilic archaea isolated from a salt mine.	Zhang WY, Huo YY, Zhang XQ, Zhu XF, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.050864-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27385	IJSEM 4380 2013 ( DOI 10.1099/ijs.0.050864-0 , PubMed 23832972 )
#31055	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27385
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halolamina salina (JCM 18549, GCMCC1.12285, WSY15-H3)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_042662265

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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