Name: Halolamina salina GCMCC1.12285
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134012

Type strain:

Species: Halolamina salina

Strain Designation: GCMCC1.12285, WSY15-H3

Culture col. no.: JCM 18549, CGMCC 1.12285

Strain history: W. Zhang WSY15-H3.

NCBI tax ID(s): 1220023 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Halolamina salina GCMCC1.12285 is an aerobe, Gram-negative archaeon that was isolated from salt mine.

Gram-negative
aerobe
16S sequence
Archaea

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Archaea*
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Haloferacaceae*
	Genus	*Halolamina*
	Species	**Halolamina salina**
	Full Scientific Name (LPSN)	Halolamina salina Zhang et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31055]	Gram stain	negative

[Ref.: #31055]	Motility	no

[Ref.: #31055]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31055]	growth	20-50 °C
[Ref.: #31055]	optimum	39.5 °C
[Ref.: #67770]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #31055]			optimum	6.5
[Ref.: #31055]			growth	6.0-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31055]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31055]		NaCl		growth	11.02-31.32	%
[Ref.: #31055]		NaCl		optimum	19.72	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31055]	acetate ChEBI	+	carbon source
[Ref.: #31055]	arginine ChEBI	+	carbon source
[Ref.: #31055]	esculin ChEBI	+	hydrolysis
[Ref.: #31055]	galactose ChEBI	+	carbon source
[Ref.: #31055]	glucose ChEBI	+	carbon source
[Ref.: #31055]	glutamate ChEBI	+	carbon source
[Ref.: #31055]	pyruvate ChEBI	+	carbon source
[Ref.: #31055]	ribose ChEBI	+	carbon source
[Ref.: #31055]	sucrose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #31055]	acid phosphatase	+	3.1.3.2
[Ref.: #31055]	catalase	+	1.11.1.6
[Ref.: #31055]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31055]	Sample type/isolated from	salt mine

[Ref.: #67770]	Sample type/isolated from	Salt mine in Wensu county
[Ref.: #67770]	Geographic location (country and/or sea, region)	Xinjiang
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Other	#Mine
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX192605 (>99% sequence identity) for Halolamina salina from Microbeatlas

Aquatic Samples
Soil Samples
Animal Samples	1
Plant Samples
Total Samples	1

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31055]	Halolamina salina strain WSY15-H3 16S ribosomal RNA gene, partial sequence	JX192605	1472	GenBank ENA	1220023 tax ID
[Ref.: #124043]	Halolamina salina gene for 16S ribosomal RNA, partial sequence, strain: JCM 18549.	AB935418	1473	GenBank ENA	1220023 tax ID	*

[Ref.: #31055]	GC-content	66.2 mol%
[Ref.: #67770]	GC-content	66.2 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #31055]

Culture collection no.

JCM 18549, CGMCC 1.12285

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halolamina sediminis sp. nov., an extremely halophilic archaeon isolated from solar salt.	Koh HW, Song HS, Song U, Yim KJ, Roh SW, Park SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.000287	2015	*
Phylogeny	Halolamina rubra sp. nov., a haloarchaeon isolated from non-purified solar salt.	Cha IT, Yim KJ, Song HS, Lee HW, Hyun DW, Kim KN, Choi JS, Kim D, Lee SJ, Seo MJ, Choi HJ, Bae JW, Rhee SK, Roh SW, Nam YD	Antonie Van Leeuwenhoek	10.1007/s10482-014-0145-0	2014	*
Phylogeny	Halolamina salifodinae sp. nov. and Halolamina salina sp. nov., two extremely halophilic archaea isolated from a salt mine.	Zhang WY, Huo YY, Zhang XQ, Zhu XF, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.050864-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31055

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27385 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#27385

IJSEM 4380 2013 ( DOI 10.1099/ijs.0.050864-0 , PubMed 23832972 )

* These data were automatically processed and therefore are not curated

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