Strain identifier

BacDive ID: 133996

Type strain: Yes

Species: Heliimonas saccharivorans

Strain Designation: L2-4

NCBI tax ID(s): 1239958 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 8.1 (current version)

General

@ref: 31023

BacDive-ID: 133996

keywords: 16S sequence, Bacteria, aerobe, Gram-negative

description: Heliimonas saccharivorans L2-4 is an aerobe, Gram-negative bacterium that was isolated from built environment.

NCBI tax id

  • NCBI tax id: 1239958
  • Matching level: species

doi: 10.13145/bacdive133996.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Chitinophagia
  • order: Chitinophagales
  • family: Chitinophagaceae
  • genus: Heliimonas
  • species: Heliimonas saccharivorans
  • full scientific name: Heliimonas saccharivorans Leandro et al. 2013

@ref: 31023

domain: Bacteria

phylum: Bacteroidetes

class: Sphingobacteriia

order: Chitinophagales

family: Chitinophagaceae

genus: Heliimonas

species: Heliimonas saccharivorans

strain designation: L2-4

type strain: yes

Morphology

cell morphology

  • @ref: 31023
  • gram stain: negative
  • motility: no

pigmentation

  • @ref: 31023
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31023positivegrowth10-45
31023positiveoptimum30mesophilic

culture pH

@refabilitytypepHPH range
31023positivegrowth4.0-9.5alkaliphile
31023positiveoptimum6.5

Physiology and metabolism

oxygen tolerance

  • @ref: 31023
  • oxygen tolerance: aerobe

halophily

  • @ref: 31023
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-0.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3102322599arabinose+carbon source
3102317057cellobiose+carbon source
3102328757fructose+carbon source
3102328260galactose+carbon source
3102317234glucose+carbon source
3102328087glycogen+carbon source
3102317716lactose+carbon source
3102317306maltose+carbon source
3102337684mannose+carbon source
3102328053melibiose+carbon source
31023506227N-acetylglucosamine+carbon source
3102316634raffinose+carbon source
3102326546rhamnose+carbon source
3102317992sucrose+carbon source
3102327082trehalose+carbon source
3102318222xylose+carbon source

enzymes

@refvalueactivityec
31023acid phosphatase+3.1.3.2
31023alkaline phosphatase+3.1.3.1
31023alpha-galactosidase+3.2.1.22
31023catalase+1.11.1.6
31023cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 31023
  • sample type: built environment

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Built environment

taxonmaps

  • @ref: 69479
  • File name: preview.99_134798.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_185;96_23002;97_28770;98_89968;99_134798&stattab=map
  • Last taxonomy: Heliimonas saccharivorans subclade
  • 16S sequence: JX458466
  • Sequence Identity:
  • Total samples: 3400
  • soil counts: 583
  • aquatic counts: 1591
  • animal counts: 834
  • plant counts: 392

Sequence information

16S sequences

  • @ref: 31023
  • description: Heliimonas saccharivorans strain L2-4 16S ribosomal RNA gene, partial sequence
  • accession: JX458466
  • length: 1456
  • database: nuccore
  • NCBI tax ID: 1239958

GC content

  • @ref: 31023
  • GC-content: 42

External links

@ref: 31023

culture collection no.: CECT 8122, LMG 26919

straininfo link

  • @ref: 91662
  • straininfo: 379499

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23667140Heliimonas saccharivorans gen. nov., sp. nov., a member of the family Chitinophagaceae isolated from a mineral water aquifer, and emended description of Filimonas lacunae.Leandro T, Franca L, Nobre MF, Rainey FA, da Costa MSInt J Syst Evol Microbiol10.1099/ijs.0.050021-02013Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Groundwater/*microbiology, Mineral Waters/*microbiology, Molecular Sequence Data, Phospholipids/analysis, *Phylogeny, Portugal, RNA, Ribosomal, 16S/genetics, Random Amplified Polymorphic DNA Technique, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny27958192Haoranjiania flava gen. nov., sp. nov., a new member of the family Chitinophagaceae, isolated from activated sludge.Zhang L, Chen XL, Hu Q, Chen K, Yan X, Li SP, Freilich S, Jiang JDInt J Syst Evol Microbiol10.1099/ijsem.0.0014112016Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31023Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172735328776041
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91662Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID379499.1