Strain identifier
BacDive ID: 133920
Type strain: 
Species: Flavobacterium nitratireducens
Strain Designation: N1
Strain history: P. Anil Kumar N1.
NCBI tax ID(s): 992289 (species)
version 8.1 (current version)
General
@ref: 30874
BacDive-ID: 133920
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Flavobacterium nitratireducens N1 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.
NCBI tax id
- NCBI tax id: 992289
- Matching level: species
strain history
- @ref: 67770
- history: P. Anil Kumar N1.
doi: 10.13145/bacdive133920.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Flavobacterium
- species: Flavobacterium nitratireducens
- full scientific name: Flavobacterium nitratireducens Nupur et al. 2013
@ref: 30874
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Flavobacterium
species: Flavobacterium nitratireducens
strain designation: N1
type strain: yes
Morphology
cell morphology
- @ref: 30874
- gram stain: negative
- cell length: 1.25 µm
- cell width: 0.25 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 30874
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 30874 | positive | growth | 15-37 | |
| 30874 | positive | optimum | 33.5 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30874 | positive | growth | 07-09 | alkaliphile |
| 30874 | positive | optimum | 8 |
Physiology and metabolism
oxygen tolerance
- @ref: 30874
- oxygen tolerance: aerobe
halophily
- @ref: 30874
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-1 %
observation
- @ref: 30874
- observation: aggregates in chains
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30874 | 17234 | glucose | + | carbon source |
| 30874 | 17306 | maltose | + | carbon source |
| 30874 | 37684 | mannose | + | carbon source |
| 30874 | 17992 | sucrose | + | carbon source |
| 30874 | 27082 | trehalose | + | carbon source |
| 30874 | 17632 | nitrate | + | reduction |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30874 | acid phosphatase | + | 3.1.3.2 |
| 30874 | alpha-galactosidase | + | 3.2.1.22 |
| 30874 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 30874 | seawater | ||||
| 67770 | Marine water from the sea shore | Bay of Bengal, Visakhapatnam | India | IND | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
Sequence information
16S sequences
- @ref: 30874
- description: Flavobacterium nitratireducens partial 16S rRNA gene, type strain N1T
- accession: FR827898
- length: 1371
- database: nuccore
- NCBI tax ID: 992289
Genome sequences
- @ref: 66792
- description: Flavobacterium nitratireducens JCM 17678
- accession: GCA_029625335
- assembly level: complete
- database: ncbi
- NCBI tax ID: 992289
GC content
- @ref: 30874
- GC-content: 36.3
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 91.141 | yes |
| flagellated | no | 96.461 | yes |
| gram-positive | no | 97.052 | yes |
| anaerobic | no | 93.928 | yes |
| aerobic | yes | 60.83 | yes |
| halophile | no | 85.242 | no |
| spore-forming | no | 97.412 | no |
| glucose-ferment | no | 57.931 | no |
| thermophile | no | 98.568 | yes |
| glucose-util | yes | 85.974 | yes |
External links
@ref: 30874
culture collection no.: MTCC 11155, JCM 17678
literature
- topic: Phylogeny
- Pubmed-ID: 23825376
- title: Flavobacterium nitratireducens sp. nov., an amylolytic bacterium of the family Flavobacteriaceae isolated from coastal surface seawater.
- authors: Nupur, Bhumika V, Srinivas TNR, Kumar PA
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.046524-0
- year: 2012
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacterium/classification/genetics/*isolation & purification, India, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Spermidine/analysis, Vitamin K 2/analogs & derivatives/analysis, Water Microbiology
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 30874 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27204 | 28776041 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |