Strain identifier

BacDive ID: 133890

Type strain: Yes

Species: Aquimarina gracilis

Strain Designation: PSC32

Strain history: <- Chi Nam Seong, Sunchon Natl. Univ.

NCBI tax ID(s): 874422 (species)

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For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 30783

BacDive-ID: 133890

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Aquimarina gracilis PSC32 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from mussel.

NCBI tax id

  • NCBI tax id: 874422
  • Matching level: species

strain history

@refhistory
67770C. N. Seong PSC32.
67771<- Chi Nam Seong, Sunchon Natl. Univ.

doi: 10.13145/bacdive133890.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Aquimarina
  • species: Aquimarina gracilis
  • full scientific name: Aquimarina gracilis Park et al. 2013

@ref: 30783

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Aquimarina

species: Aquimarina gracilis

strain designation: PSC32

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
30783negative4 µm0.25 µmrod-shapedno
67771rod-shapedno
67771negative

pigmentation

  • @ref: 30783
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30783positivegrowth15-37
30783positiveoptimum27.5mesophilic
67770positivegrowth25mesophilic
67771positivegrowth25mesophilic

culture pH

@refabilitytypepHPH range
30783positivegrowth07-09alkaliphile
30783positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30783aerobe
67771aerobe

halophily

@refsaltgrowthtested relationconcentration
30783NaClpositivegrowth01-05 %
30783NaClpositiveoptimum2 %

observation

@refobservation
30783aggregates in clumps
67771quinones: MK-6

enzymes

@refvalueactivityec
30783acid phosphatase+3.1.3.2
30783alkaline phosphatase+3.1.3.1
30783catalase+1.11.1.6
30783cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typehost speciescountryorigin.countrycontinentlatitudelongitudegeographic location
30783mussel
67770Mussel Mytilus coruscus from Gwangyang Bay (34° 53' N 127° 46' E)Mytilus coruscusRepublic of KoreaKORAsia34.85127.783
67771From mussel `Mytilus coruscus`Republic of KoreaKORAsia34.8833127.767the South Sea

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)
  • Cat3: #Mollusca

taxonmaps

  • @ref: 69479
  • File name: preview.99_19903.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_52;96_8899;97_10695;98_15042;99_19903&stattab=map
  • Last taxonomy: Aquimarina gracilis subclade
  • 16S sequence: HM998909
  • Sequence Identity:
  • Total samples: 15
  • aquatic counts: 15

Sequence information

16S sequences

  • @ref: 30783
  • description: Aquimarina gracilis strain PSC32 16S ribosomal RNA gene, partial sequence
  • accession: HM998909
  • length: 1460
  • database: nuccore
  • NCBI tax ID: 874422

GC content

  • @ref: 67771
  • GC-content: 36.9

External links

@ref: 30783

culture collection no.: KCTC 23301, JCM 17453

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22941302Aquimarina gracilis sp. nov., isolated from the gut microflora of a mussel, Mytilus coruscus, and emended description of Aquimarina spongiae.Park SC, Choe HN, Baik KS, Seong CNInt J Syst Evol Microbiol10.1099/ijs.0.044289-02012Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Gastrointestinal Tract/*microbiology, Molecular Sequence Data, Mytilus/*microbiology, Nucleic Acid Hybridization, Phosphatidylethanolamines/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny25253586Aquimarina penaei sp. nov., isolated from intestinal tract contents of Pacific white shrimp, Penaeus vannamei.Li X, Wang L, Huang H, Lai Q, Shao ZAntonie Van Leeuwenhoek10.1007/s10482-014-0292-32014Animals, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification, Gastrointestinal Tract/microbiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Penaeidae/*microbiology, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Salts/metabolism, Sequence Analysis, DNA, TemperatureGenetics
Phylogeny36223175Aquimarina acroporae sp. nov., isolated from seawater surrounding scleractinian coral Acropora digitifera.Sun H, Rao C, Yang X, Xie Z, Chen B, Zheng H, Liao B, Xiao BInt J Syst Evol Microbiol10.1099/ijsem.0.0056072022Animals, *Anthozoa, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Flavobacteriaceae, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Sodium Chloride, Vitamin K 2/chemistryTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30783Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172711428776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/