Aquimarina gracilis (KCTC 23301, JCM 17453, PSC32)

Name: Aquimarina gracilis (KCTC 23301, JCM 17453, PSC32)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133890

Type strain

Strain Designation PSC32

Culture col. no. KCTC 23301 JCM 17453 PSC32

NCBI tax ID(s) 874422

Special Collections JCM KCTC Literature strains

History JCM <-- C. N. Seong PSC32. KCTC <- Chi Nam Seong, Sunchon Natl. Univ.

Links

Aquimarina gracilis PSC32 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from mussel.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 27726

KCTC 23301,JCM 17453

@ref 20215

Last LPSN update 2026-05-29 08:38:12

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Aquimarina

Species Aquimarina gracilis

Full scientific name Aquimarina gracilis Park et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30783	negative	4 µm	0.25 µm	rod-shaped
67771				rod-shaped
67771	negative
125439	negative				97.067

Pigmentation

30783

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
30783	positive	growth	15-37
30783	positive	optimum	27.5
67770	positive	growth	25
67771	positive	growth	25

Culture pH

@ref	Ability	Type	PH	PH range
30783	positive	optimum	7
30783	positive	growth	07-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
30783	aerobe
67771	aerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.078

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30783	NaCl	positive	growth	01-05 %
30783	NaCl	positive	optimum	2 %

Observation

@ref	Observation
30783	aggregates in clumps
67771	quinones: MK-6

Enzymes

@ref	Value	Activity	Ec
30783	acid phosphatase	+	3.1.3.2
30783	alkaline phosphatase	+	3.1.3.1
30783	catalase	+	1.11.1.6
30783	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Invertebrates (Other)	#Mollusca

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Geographic location
30783	mussel
67770	Mussel Mytilus coruscus from Gwangyang Bay (34° 53' N 127° 46' E)	Mytilus coruscus	Republic of Korea	KOR	Asia	34.85	127.783 34.85/127.783
67771	From mussel `Mytilus coruscus`		Republic of Korea	KOR	Asia	34.8833	127.767 34.8833/127.767	the South Sea

Taxonmaps

69479

Global distribution of 16S sequence HM998909 (>99% sequence identity) for Aquimarina gracilis subclade from Microbeatlas

Aquatic Samples	15
Soil Samples	0
Animal Samples	0
Plant Samples	0
Total Samples	15

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3953762v1 assembly for Aquimarina gracilis JCM 17453	scaffold	GCA_039537625	874422	53.65

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30783	Aquimarina gracilis strain PSC32 16S ribosomal RNA gene, partial sequence	HM998909	1460		874422

GC content

67771

GC-content (mol%)36.9

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3953762v1 assembly for Aquimarina gracilis JCM 17453
NCBI: GCA_039537625

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	88.34	no
125439	gram_stain	BacteriaNetⓘ	negative	97.07	no
125439	spore_formation	BacteriaNetⓘ	no	99.08	no
125439	motility	BacteriaNetⓘ	no	77.84	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aquimarina penaei sp. nov., isolated from intestinal tract contents of Pacific white shrimp, Penaeus vannamei.	Li X, Wang L, Huang H, Lai Q, Shao Z	Antonie Van Leeuwenhoek	10.1007/s10482-014-0292-3	2014
Phylogeny	Aquimarina gracilis sp. nov., isolated from the gut microflora of a mussel, Mytilus coruscus, and emended description of Aquimarina spongiae.	Park SC, Choe HN, Baik KS, Seong CN	Int J Syst Evol Microbiol	10.1099/ijs.0.044289-0	2012
Phylogeny	Aquimarina acroporae sp. nov., isolated from seawater surrounding scleractinian coral Acropora digitifera.	Sun H, Rao C, Yang X, Xie Z, Chen B, Zheng H, Liao B, Xiao B	Int J Syst Evol Microbiol	10.1099/ijsem.0.005607	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27114	IJSEM 1782 2013 ( DOI 10.1099/ijs.0.044289-0 , PubMed 22941302 )
#30783	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27114
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aquimarina gracilis (KCTC 23301, JCM 17453, PSC32)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_039537625

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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