Strain identifier
BacDive ID: 133872
Type strain: 
Species: Aureivirga marina
Strain Designation: VIII.04
NCBI tax ID(s): 1182451 (species)
version 8.1 (current version)
General
@ref: 30731
BacDive-ID: 133872
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Aureivirga marina VIII.04 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from isolated from the Mediterranean sponge.
NCBI tax id
- NCBI tax id: 1182451
- Matching level: species
doi: 10.13145/bacdive133872.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Aureivirga
- species: Aureivirga marina
- full scientific name: Aureivirga marina Haber et al. 2013
@ref: 30731
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Aureivirga
species: Aureivirga marina
strain designation: VIII.04
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 30731 | negative | 4.5 µm | 0.5 µm | rod-shaped | no | |
| 69480 | negative | 99.968 |
pigmentation
- @ref: 30731
- production: yes
Culture and growth conditions
culture temp
- @ref: 30731
- growth: positive
- type: growth
- temperature: 15-37
culture pH
- @ref: 30731
- ability: positive
- type: growth
- pH: 06-09
- PH range: alkaliphile
Physiology and metabolism
oxygen tolerance
- @ref: 30731
- oxygen tolerance: aerobe
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.963
halophily
- @ref: 30731
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 02-08 %
observation
- @ref: 30731
- observation: aggregates in clumps
metabolite utilization
- @ref: 30731
- Chebi-ID: 17632
- metabolite: nitrate
- utilization activity: +
- kind of utilization tested: reduction
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30731 | acid phosphatase | + | 3.1.3.2 |
| 30731 | alkaline phosphatase | + | 3.1.3.1 |
| 30731 | gelatinase | + |
Isolation, sampling and environmental information
isolation
- @ref: 30731
- sample type: isolated from the Mediterranean sponge
isolation source categories
- Cat1: #Host
- Cat2: #Invertebrates (Other)
- Cat3: #Porifera (Sponges)
taxonmaps
- @ref: 69479
- File name: preview.99_152777.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1049;96_35374;97_74838;98_100832;99_152777&stattab=map
- Last taxonomy: Aureivirga
- 16S sequence: JN699064
- Sequence Identity:
- Total samples: 686
- soil counts: 47
- aquatic counts: 595
- animal counts: 44
Sequence information
16S sequences
- @ref: 30731
- description: Aureivirga marina strain VIII.04 16S ribosomal RNA gene, partial sequence
- accession: JN699064
- length: 1308
- database: nuccore
- NCBI tax ID: 1182451
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Aureivirga marina LMG 26721 | GCA_015767265 | scaffold | ncbi | 1182451 |
| 66792 | Aureivirga marina strain LMG 26721 | 1182451.3 | wgs | patric | 1182451 |
GC content
- @ref: 30731
- GC-content: 30.7
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 88 | no |
| flagellated | no | 95.081 | yes |
| gram-positive | no | 98.427 | yes |
| anaerobic | no | 99.103 | no |
| aerobic | yes | 82.85 | no |
| halophile | no | 71.636 | no |
| spore-forming | no | 93.535 | no |
| thermophile | no | 99.736 | no |
| glucose-util | yes | 69.553 | no |
| motile | no | 88.931 | yes |
| glucose-ferment | no | 91.619 | no |
External links
@ref: 30731
culture collection no.: ATCC BAA 2394, LMG 26721
straininfo link
- @ref: 91624
- straininfo: 378401
literature
- topic: Phylogeny
- Pubmed-ID: 22707537
- title: Aureivirga marina gen. nov., sp. nov., a marine bacterium isolated from the Mediterranean sponge Axinella verrucosa.
- authors: Haber M, Shefer S, Giordano A, Orlando P, Gambacorta A, Ilan M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.043257-0
- year: 2012
- mesh: Animals, Axinella/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 30731 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27062 | 28776041 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 91624 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID378401.1 |