Strain identifier

BacDive ID: 133872

Type strain: Yes

Species: Aureivirga marina

Strain Designation: VIII.04

NCBI tax ID(s): 1182451 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 30731

BacDive-ID: 133872

keywords: rod-shaped, Gram-negative, aerobe, Bacteria, 16S sequence

description: Aureivirga marina VIII.04 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from isolated from the Mediterranean sponge.

NCBI tax id

  • NCBI tax id: 1182451
  • Matching level: species

doi: 10.13145/bacdive133872.20211221.6

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidetes
  • domain: Bacteria
  • phylum: Bacteroidetes
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Aureivirga
  • species: Aureivirga marina
  • full scientific name: Aureivirga marina Haber et al. 2013

@ref: 30731

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Aureivirga

species: Aureivirga marina

strain designation: VIII.04

type strain: yes

Morphology

cell morphology

  • @ref: 30731
  • gram stain: negative
  • cell length: 4.5 µm
  • cell width: 0.5 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 30731
  • production: yes

Culture and growth conditions

culture temp

  • @ref: 30731
  • growth: positive
  • type: growth
  • temperature: 15-37

culture pH

  • @ref: 30731
  • ability: positive
  • type: growth
  • pH: 06-09

Physiology and metabolism

oxygen tolerance

  • @ref: 30731
  • oxygen tolerance: aerobe

halophily

  • @ref: 30731
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 02-08 %

observation

  • @ref: 30731
  • observation: aggregates in clumps

metabolite utilization

  • @ref: 30731
  • Chebi-ID: 17632
  • metabolite: nitrate
  • utilization activity: +
  • kind of utilization tested: reduction

enzymes

@refvalueactivityec
30731acid phosphatase+3.1.3.2
30731alkaline phosphatase+3.1.3.1
30731gelatinase+

Isolation, sampling and environmental information

isolation

  • @ref: 30731
  • sample type: isolated from the Mediterranean sponge

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)
  • Cat3: #Porifera (Sponges)

Sequence information

16S sequences

  • @ref: 30731
  • description: Aureivirga marina strain VIII.04 16S ribosomal RNA gene, partial sequence
  • accession: JN699064
  • length: 1308
  • database: nuccore
  • NCBI tax ID: 1182451

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aureivirga marina LMG 26721GCA_015767265scaffoldncbi1182451
66792Aureivirga marina strain LMG 267211182451.3wgspatric1182451

GC content

  • @ref: 30731
  • GC-content: 30.7

External links

@ref: 30731

culture collection no.: ATCC BAA 2394, LMG 26721

straininfo link

  • @ref: 20218
  • passport: http://www.straininfo.net/strains/867535

Reference

@idauthorstitledoi/urljournalpubmedID_cross_reference
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
2706210.1099/ijs.0.043257-022707537
30731Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172877604127062