Name: Aureivirga marina VIII.04
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133872

Type strain:

Species: Aureivirga marina

Strain Designation: VIII.04

Culture col. no.: ATCC BAA-2394, LMG 26721

NCBI tax ID(s): 1182451 (species)

SI-ID 378401

LMG 26721, ATCC BAA-2394

Section

Aureivirga marina VIII.04 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from isolated from the Mediterranean sponge.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Aureivirga*
	Species	**Aureivirga marina**
	Full Scientific Name (LPSN)	Aureivirga marina Haber et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30731]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.968

[Ref.: #30731]	Cell length	4.5 µm

[Ref.: #30731]	Cell width	0.5 µm

[Ref.: #30731]	Cell shape	rod-shaped

[Ref.: #30731]	Motility	no

[Ref.: #30731]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #30731]			growth	15-37 °C

	pH	Kind of pH		pH
[Ref.: #30731]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30731]

Oxygen tolerance

aerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.963

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30731]		NaCl		growth	02-08	%

[Ref.: #30731]

Observation

aggregates in clumps

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30731]		nitrate ChEBI	+	reduction

	Enzyme	Enzyme activity	EC number
[Ref.: #30731]	acid phosphatase	+	3.1.3.2
[Ref.: #30731]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30731]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30731]	Sample type/isolated from	isolated from the Mediterranean sponge
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Porifera (Sponges)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JN699064 (>99% sequence identity) for Aureivirga from Microbeatlas

Aquatic Samples	595
Soil Samples	47
Animal Samples	44
Plant Samples
Total Samples	686

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30731]	Aureivirga marina strain VIII.04 16S ribosomal RNA gene, partial sequence	JN699064	1308	GenBank	1182451 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aureivirga marina LMG 26721	GCA_015767265	scaffold	GenBank	1182451 tax ID	*
[Ref.: #66792]	Aureivirga marina strain LMG 26721	1182451.3	wgs	PATRIC	1182451 tax ID	*

[Ref.: #30731]

GC-content

30.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aureivirga marina LMG 26721 NCBI: GCA_015767265.1
[Ref.: #69481]	spore-forming	no	88	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aureivirga marina LMG 26721 NCBI: GCA_015767265.1
[Ref.: #69480]	flagellated	no	95.081	yes
[Ref.: #69480]	gram-positive	no	98.427	yes
[Ref.: #69480]	anaerobic	no	99.103	no
[Ref.: #69480]	aerobic	yes	82.85	no
[Ref.: #69480]	halophile	no	71.636	no
[Ref.: #69480]	spore-forming	no	93.535	no
[Ref.: #69480]	thermophile	no	99.736	no
[Ref.: #69480]	glucose-util	yes	69.553	no
[Ref.: #69480]	motile	no	88.931	yes
[Ref.: #69480]	glucose-ferment	no	91.619	no

Availability in culture collections External links

[Ref.: #30731]

Culture collection no.

ATCC BAA-2394, LMG 26721

[Ref.: #91624]

SI-ID 378401

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aureivirga marina gen. nov., sp. nov., a marine bacterium isolated from the Mediterranean sponge Axinella verrucosa.	Haber M, Shefer S, Giordano A, Orlando P, Gambacorta A, Ilan M	Int J Syst Evol Microbiol	10.1099/ijs.0.043257-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30731

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27062 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91624

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID378401.1 )

#27062

IJSEM 1089 2013 ( DOI 10.1099/ijs.0.043257-0 , PubMed 22707537 )

* These data were automatically processed and therefore are not curated

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Aureivirga marina LMG 26721

Aureivirga marina LMG 26721

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