Strain identifier

BacDive ID: 133816

Type strain: Yes

Species: Paracoccus rhizosphaerae

Strain Designation: CC-CCM15-8, CC-M15-8

Strain history: <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; CC-M15-8 <- A. B. Arun

NCBI tax ID(s): 1133347 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 8.1 (current version)

General

@ref: 42653

BacDive-ID: 133816

DSM-Number: 24468

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, coccus-shaped

description: Paracoccus rhizosphaerae CC-CCM15-8 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1133347
  • Matching level: species

strain history

  • @ref: 42653
  • history: <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; CC-M15-8 <- A. B. Arun

doi: 10.13145/bacdive133816.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Paracoccaceae
  • genus: Paracoccus
  • species: Paracoccus rhizosphaerae
  • full scientific name: Paracoccus rhizosphaerae Kämpfer et al. 2012

@ref: 42653

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Paracoccus

species: Paracoccus rhizosphaerae

full scientific name: Paracoccus rhizosphaerae Kämpfer et al. 2012

strain designation: CC-CCM15-8, CC-M15-8

type strain: yes

Morphology

cell morphology

  • @ref: 30574
  • gram stain: negative
  • cell width: 1.75 µm
  • cell shape: coccus-shaped

colony morphology

  • @ref: 62413
  • incubation period: 2 days

pigmentation

  • @ref: 30574
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 42653
  • name: OXOID NUTRIENT BROTH (DSMZ Medium 948)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/948
  • composition: Name: OXOID NUTRIENT BROTH (DSMZ Medium 948) Composition: Nutrient broth 13.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
42653positivegrowth28mesophilic
30574positiveoptimum28
62413positivegrowth30

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30574aerobe
62413aerobe

halophily

@refsaltgrowthtested relationconcentration
30574NaClpositivegrowth01-10 %
30574NaClpositiveoptimum6.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3057430089acetate+carbon source
3057415963ribitol+carbon source
3057416449alanine+carbon source
3057422599arabinose+carbon source
3057435391aspartate+carbon source
3057417057cellobiose+carbon source
3057416947citrate+carbon source
3057428757fructose+carbon source
3057428260galactose+carbon source
3057417234glucose+carbon source
3057424996lactate+carbon source
3057425017leucine+carbon source
3057425115malate+carbon source
3057417306maltose+carbon source
3057429864mannitol+carbon source
3057437684mannose+carbon source
3057426271proline+carbon source
3057417272propionate+carbon source
3057415361pyruvate+carbon source
3057426546rhamnose+carbon source
3057433942ribose+carbon source
3057417822serine+carbon source
3057430911sorbitol+carbon source
3057417992sucrose+carbon source
3057427082trehalose+carbon source
305744853esculin+hydrolysis

enzymes

@refvalueactivityec
30574catalase+1.11.1.6
30574cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinent
30574soil
62413Crossostephium chinense rhizosphere soil sample2008Taituang, Green Island (Lutao)TaiwanTWNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_15176.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_6464;97_7750;98_11484;99_15176&stattab=map
  • Last taxonomy: Paracoccus rhizosphaerae
  • 16S sequence: JN662389
  • Sequence Identity:
  • Total samples: 238
  • soil counts: 26
  • aquatic counts: 129
  • animal counts: 70
  • plant counts: 13

Safety information

risk assessment

  • @ref: 42653
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 30574
  • description: Paracoccus rhizosphaerae strain CC-CCM15-8 16S ribosomal RNA gene, partial sequence
  • accession: JN662389
  • length: 1390
  • database: nuccore
  • NCBI tax ID: 1133347

External links

@ref: 42653

culture collection no.: LMG 26205, CCM 7904, CCUG 60723, DSM 24468

straininfo link

@refstraininfo
91602400660
91603410332

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22286908Paracoccus rhizosphaerae sp. nov., isolated from the rhizosphere of the plant Crossostephium chinense (L.) Makino (Seremban).Kampfer P, Lai WA, Arun AB, Young CC, Rekha PD, Martin K, Busse HJ, Chen WMInt J Syst Evol Microbiol10.1099/ijs.0.039057-02012Asteraceae/*microbiology, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Paracoccus/*classification/genetics/isolation & purification, *Phylogeny, Polyamines/analysis, Quinones/analysis, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, Soil Microbiology, TaiwanGenetics
Phylogeny28598318Paracoccus hibisci sp. nov., isolated from the rhizosphere of Hibiscus syriacus L. (Mugunghwa flower).Yan ZF, Moya G, Lin P, Won KH, Yang JE, Li CT, Kook M, Wang QJ, Yi THInt J Syst Evol Microbiol10.1099/ijsem.0.0018742017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hibiscus/*microbiology, Nucleic Acid Hybridization, Paracoccus/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistryTranscriptome
Phylogeny29484518Paracoccus pueri sp. nov., isolated from Pu'er tea.Wang YS, Yan ZF, Lin P, Gao W, Yi THAntonie Van Leeuwenhoek10.1007/s10482-018-1041-92018Base Composition, Carbohydrate Metabolism, China, Fatty Acids/chemistry, Flagella, Nucleic Acid Hybridization, Paracoccus/chemistry/*classification/genetics, Phenotype, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Tea/*microbiology, Ubiquinone/chemistryPhenotype

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30574Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172690528776041
42653Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-24468Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24468)
62413Curators of the CCUGhttps://www.ccug.se/strain?id=60723Culture Collection University of Gothenburg (CCUG) (CCUG 60723)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91602Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400660.1
91603Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID410332.1