Paracoccus rhizosphaerae (LMG 26205, CCM 7904, CCUG 60723)

Name: Paracoccus rhizosphaerae (LMG 26205, CCM 7904, CCUG 60723)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133816

Type strain

Strain Designation CC-CCM15-8, CC-M15-8

Culture col. no. LMG 26205 CCM 7904 CCUG 60723 DSM 24468 CC-CCM15-8 1 more

NCBI tax ID(s) 1133347

Special Collections DSMZ CCUG Literature strains

History <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; CC-M15-8 <- A. B. Arun

Links

Paracoccus rhizosphaerae CC-CCM15-8 is an aerobe, Gram-negative, coccus-shaped bacterium that was isolated from soil.

Gram-negative coccus-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 410332

LMG 26205,CCUG 60723

@ref 20215

Last LPSN update 2026-02-09 11:32:02

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Paracoccaceae

Genus Paracoccus

Species Paracoccus rhizosphaerae

Full scientific name Paracoccus rhizosphaerae Kämpfer et al. 2012

BacDive ID	Other strains from **Paracoccus rhizosphaerae** (1)	Type strain
140046	P. rhizosphaerae

Morphology

Cell morphology

@ref	Gram stain	Cell width	Cell shape
30574	negative	1.75 µm	coccus-shaped

Colony morphology

62413

Incubation period2 days

Pigmentation

30574

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
42653	OXOID NUTRIENT BROTH (DSMZ Medium 948)		Medium recipe at MediaDive	Name: OXOID NUTRIENT BROTH (DSMZ Medium 948) Composition: Nutrient broth 13.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
30574	positive	optimum	28
42653	positive	growth	28
62413	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
30574	aerobe
62413	aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30574	NaCl	positive	growth	01-10 %
30574	NaCl	positive	optimum	6.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30574	30089 ChEBI	acetate	+	carbon source
30574	16449 ChEBI	alanine	+	carbon source
30574	22599 ChEBI	arabinose	+	carbon source
30574	35391 ChEBI	aspartate	+	carbon source
30574	17057 ChEBI	cellobiose	+	carbon source
30574	16947 ChEBI	citrate	+	carbon source
30574	4853 ChEBI	esculin	+	hydrolysis
30574	28757 ChEBI	fructose	+	carbon source
30574	28260 ChEBI	galactose	+	carbon source
30574	17234 ChEBI	glucose	+	carbon source
30574	24996 ChEBI	lactate	+	carbon source
30574	25017 ChEBI	leucine	+	carbon source
30574	25115 ChEBI	malate	+	carbon source
30574	17306 ChEBI	maltose	+	carbon source
30574	29864 ChEBI	mannitol	+	carbon source
30574	37684 ChEBI	mannose	+	carbon source
30574	26271 ChEBI	proline	+	carbon source
30574	17272 ChEBI	propionate	+	carbon source
30574	15361 ChEBI	pyruvate	+	carbon source
30574	26546 ChEBI	rhamnose	+	carbon source
30574	15963 ChEBI	ribitol	+	carbon source
30574	33942 ChEBI	ribose	+	carbon source
30574	17822 ChEBI	serine	+	carbon source
30574	30911 ChEBI	sorbitol	+	carbon source
30574	17992 ChEBI	sucrose	+	carbon source
30574	27082 ChEBI	trehalose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30574	catalase	+	1.11.1.6
30574	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
30574	soil
62413	Crossostephium chinense rhizosphere soil sample	2008	Taituang, Green Island (Lutao)	Taiwan, Province of China	TWN	Asia
42653	coastal hot spring		Green Island (Lutao), Taituang	Taiwan, Province of China	TWN	Asia

Taxonmaps

69479

Global distribution of 16S sequence JN662389 (>99% sequence identity) for Paracoccus rhizosphaerae from Microbeatlas

Aquatic Samples	129
Soil Samples	26
Animal Samples	70
Plant Samples	13
Total Samples	238

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
42653	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4264924v1 assembly for Paracoccus rhizosphaerae CCM 7904	contig	GCA_042649245	1133347	72.64
124043	ASM4243283v1 assembly for Paracoccus rhizosphaerae CCM 7904	scaffold	GCA_042432835	1133347	27.51

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30574	Paracoccus rhizosphaerae strain CC-CCM15-8 16S ribosomal RNA gene, partial sequence	JN662389	1390		1133347
124043	Paracoccus rhizosphaerae strain CCM 7904 16S ribosomal RNA gene, partial sequence.	MT760188	1322		1133347

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Isolation and Characterization of Paracoccus maritimus sp. nov., from Intertidal Sediment.	Yu L, Xu G, Wei S, Lai Q, Shao Z.	Curr Microbiol	10.1007/s00284-024-03637-5	2024
Phylogeny	Paracoccus pueri sp. nov., isolated from Pu'er tea.	Wang YS, Yan ZF, Lin P, Gao W, Yi TH	Antonie Van Leeuwenhoek	10.1007/s10482-018-1041-9	2018
Phylogeny	Paracoccus hibisci sp. nov., isolated from the rhizosphere of Hibiscus syriacus L. (Mugunghwa flower).	Yan ZF, Moya G, Lin P, Won KH, Yang JE, Li CT, Kook M, Wang QJ, Yi TH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001874	2017
Phylogeny	Paracoccus rhizosphaerae sp. nov., isolated from the rhizosphere of the plant Crossostephium chinense (L.) Makino (Seremban).	Kampfer P, Lai WA, Arun AB, Young CC, Rekha PD, Martin K, Busse HJ, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.039057-0	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26905	IJSEM 2750 2012 ( DOI 10.1099/ijs.0.039057-0 , PubMed 22286908 )
#30574	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26905
#42653	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24468
#62413	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60723
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paracoccus rhizosphaerae (LMG 26205, CCM 7904, CCUG 60723)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042649245

16S sequences

Genome-based predictions

Literature

Literature

References

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