Strain identifier
BacDive ID: 133765
Type strain: 
Species: Namhaeicola litoreus
Strain Designation: DPG-25
Strain history: <- JH Yoon, KRIBB
NCBI tax ID(s): 1052145 (species)
version 8.1 (current version)
General
@ref: 30434
BacDive-ID: 133765
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, ovoid-shaped
description: Namhaeicola litoreus DPG-25 is an aerobe, Gram-negative, ovoid-shaped bacterium that was isolated from seawater.
NCBI tax id
- NCBI tax id: 1052145
- Matching level: species
strain history
- @ref: 67771
- history: <- JH Yoon, KRIBB
doi: 10.13145/bacdive133765.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Namhaeicola
- species: Namhaeicola litoreus
- full scientific name: Namhaeicola litoreus Jung et al. 2012
@ref: 30434
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Namhaeicola
species: Namhaeicola litoreus
strain designation: DPG-25
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility |
|---|---|---|---|---|---|
| 30434 | negative | 5 µm | 0.55 µm | ovoid-shaped | no |
| 67771 | negative |
colony morphology
- @ref: 62638
- incubation period: 2 days
pigmentation
- @ref: 30434
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 30434 | positive | growth | 20-37 | |
| 30434 | positive | optimum | 25 | mesophilic |
| 62638 | positive | growth | 30 | mesophilic |
| 67771 | positive | growth | 25 | mesophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 30434 | positive | growth | 6.0-7.5 |
| 30434 | positive | optimum | 7.25 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 30434 | aerobe |
| 62638 | aerobe |
| 67771 | aerobe |
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30434 | NaCl | positive | growth | 0.5-4 % |
| 30434 | NaCl | positive | optimum | 2 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30434 | 28260 | galactose | + | carbon source |
| 30434 | 27082 | trehalose | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30434 | catalase | + | 1.11.1.6 |
| 30434 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | sampling date | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 30434 | seawater | |||||
| 62638 | seawater in seaweed farm | 2009 | South Sea,Geojedo | Republic of Korea | KOR | Asia |
| 67771 | From seawater | Geojedo, the South Sea | Republic of Korea | KOR | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_86723.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1049;96_19363;97_45815;98_59992;99_86723&stattab=map
- Last taxonomy: Namhaeicola litoreus subclade
- 16S sequence: JN033800
- Sequence Identity:
- Total samples: 1814
- soil counts: 38
- aquatic counts: 1670
- animal counts: 102
- plant counts: 4
Sequence information
16S sequences
- @ref: 30434
- description: Namhaeicola litoreus strain DPG-25 16S ribosomal RNA gene, partial sequence
- accession: JN033800
- length: 1443
- database: nuccore
- NCBI tax ID: 1052145
GC content
- @ref: 30434
- GC-content: 39.9
External links
@ref: 30434
culture collection no.: KCTC 23702, CCUG 61485, KCTC 23702T
straininfo link
- @ref: 91588
- straininfo: 410060
literature
- topic: Phylogeny
- Pubmed-ID: 22058323
- title: Namhaeicola litoreus gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from seawater.
- authors: Jung YT, Kim JH, Kang SJ, Oh TK, Yoon JH
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.036046-0
- year: 2011
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed | catalogue |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 30434 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26770 | 28776041 | |
| 62638 | Curators of the CCUG | https://www.ccug.se/strain?id=61485 | Culture Collection University of Gothenburg (CCUG) (CCUG 61485) | |||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 91588 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID410060.1 |