Name: Namhaeicola litoreus DPG-25
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133765

Type strain:

Species: Namhaeicola litoreus

Strain Designation: DPG-25

Culture col. no.: KCTC 23702, CCUG 61485, KCTC 23702T

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 1052145 (species)

SI-ID 410060

CCUG 61485

Special Collections

Section

When using BacDive for research please cite our paper

Namhaeicola litoreus DPG-25 is an aerobe, Gram-negative, ovoid-shaped bacterium that was isolated from seawater.

Gram-negative
ovoid-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Namhaeicola*
	Species	**Namhaeicola litoreus**
	Full Scientific Name (LPSN)	Namhaeicola litoreus Jung et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30434]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #30434]	Cell length	5 µm

[Ref.: #30434]	Cell width	0.55 µm

[Ref.: #30434]	Cell shape	ovoid-shaped

[Ref.: #30434]	Motility	no

[Ref.: #62638]

Incubation period

2 days

[Ref.: #30434]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30434]	growth	20-37 °C
[Ref.: #30434]	optimum	25 °C
[Ref.: #62638]	growth	30 °C
[Ref.: #67771]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #30434]			optimum	7.25
[Ref.: #30434]			growth	6.0-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30434]	Oxygen tolerance	aerobe
[Ref.: #62638]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30434]		NaCl		growth	0.5-4	%
[Ref.: #30434]		NaCl		optimum	2	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30434]		galactose ChEBI	+	carbon source
[Ref.: #30434]		trehalose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30434]		catalase	+	1.11.1.6
[Ref.: #30434]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30434]	Sample type/isolated from	seawater

[Ref.: #62638]	Sample type/isolated from	seawater in seaweed farm
[Ref.: #62638]	Sampling date	2009
[Ref.: #62638]	Geographic location (country and/or sea, region)	South Sea,Geojedo
[Ref.: #62638]	Country	Republic of Korea
[Ref.: #62638]	Country ISO 3 Code	KOR
[Ref.: #62638]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From seawater
[Ref.: #67771]	Geographic location (country and/or sea, region)	Geojedo, the South Sea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JN033800 (>99% sequence identity) for Namhaeicola litoreus subclade from Microbeatlas

Aquatic Samples	1670
Soil Samples	38
Animal Samples	102
Plant Samples	4
Total Samples	1814

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30434]	Namhaeicola litoreus strain DPG-25 16S ribosomal RNA gene, partial sequence	JN033800	1443	GenBank ENA	1052145 tax ID

[Ref.: #30434]

GC-content

39.9 mol%

Availability in culture collections External links

[Ref.: #30434]

Culture collection no.

KCTC 23702, CCUG 61485, KCTC 23702T

[Ref.: #91588]

SI-ID 410060

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Namhaeicola litoreus gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from seawater.	Jung YT, Kim JH, Kang SJ, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.036046-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30434

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26770 (see below)

#62638 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 61485
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91588

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID410060.1 )

#26770

IJSEM 2163 2012 ( DOI 10.1099/ijs.0.036046-0 , PubMed 22058323 )

* These data were automatically processed and therefore are not curated

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