Strain identifier
BacDive ID: 133726
Type strain: 
Species: Flavobacterium compostarboris
Strain Designation: 15C3
Strain history: S. Kanaya 15C3.
NCBI tax ID(s): 659443 (species)
version 8.1 (current version)
General
@ref: 30297
BacDive-ID: 133726
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped
description: Flavobacterium compostarboris 15C3 is an aerobe, Gram-negative, motile bacterium that was isolated from Compost.
NCBI tax id
- NCBI tax id: 659443
- Matching level: species
strain history
- @ref: 67770
- history: S. Kanaya 15C3.
doi: 10.13145/bacdive133726.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Flavobacterium
- species: Flavobacterium compostarboris
- full scientific name: Flavobacterium compostarboris Kim et al. 2012
@ref: 30297
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Flavobacterium
species: Flavobacterium compostarboris
strain designation: 15C3
type strain: yes
Morphology
cell morphology
- @ref: 30297
- gram stain: negative
- cell length: 4.2 µm
- cell width: 0.5 µm
- cell shape: rod-shaped
- motility: yes
- flagellum arrangement: gliding
pigmentation
- @ref: 30297
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 30297 | positive | growth | 09-33 | |
| 30297 | positive | optimum | 25 | mesophilic |
| 67770 | positive | growth | 25 | mesophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 30297 | positive | growth | 5.6-7.9 |
| 30297 | positive | optimum | 6.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 30297
- oxygen tolerance: aerobe
spore formation
- @ref: 30297
- spore formation: no
halophily
- @ref: 30297
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-2 %
observation
- @ref: 67770
- observation: quinones: MK-6
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30297 | 22599 | arabinose | + | carbon source |
| 30297 | 17234 | glucose | + | carbon source |
| 30297 | 17306 | maltose | + | carbon source |
| 30297 | 37684 | mannose | + | carbon source |
| 30297 | 506227 | N-acetylglucosamine | + | carbon source |
| 30297 | 4853 | esculin | + | hydrolysis |
metabolite production
- @ref: 30297
- Chebi-ID: 35581
- metabolite: indole
- production: yes
metabolite tests
- @ref: 30297
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30297 | acid phosphatase | + | 3.1.3.2 |
| 30297 | alkaline phosphatase | + | 3.1.3.1 |
| 30297 | catalase | + | 1.11.1.6 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 30297 | Compost | ||||
| 67770 | Leaf-and-branch compost at EXPO Park | Osaka | Japan | JPN | Asia |
isolation source categories
- Cat1: #Engineered
- Cat2: #Biodegradation
- Cat3: #Composting
Sequence information
16S sequences
- @ref: 30297
- description: Flavobacterium compostarboris strain 15C3 16S ribosomal RNA gene, partial sequence
- accession: GQ281769
- length: 1461
- database: nuccore
- NCBI tax ID: 659443
GC content
| @ref | GC-content | method |
|---|---|---|
| 30297 | 33.6 | |
| 67770 | 33.6 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 30297
culture collection no.: KACC 14224, JCM 16527
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 22021577 | Flavobacterium compostarboris sp. nov., isolated from leaf-and-branch compost, and emended descriptions of Flavobacterium hercynium, Flavobacterium resistens and Flavobacterium johnsoniae. | Kim JJ, Kanaya E, Weon HY, Koga Y, Takano K, Dunfield PF, Kwon SW, Kanaya S | Int J Syst Evol Microbiol | 10.1099/ijs.0.032920-0 | 2011 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacterium/*classification/genetics/isolation & purification, Japan, Molecular Sequence Data, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil, *Soil Microbiology | Genetics |
| Phylogeny | 29547095 | Flavobacterium artemisiae sp. nov., isolated from the rhizosphere of Artemisia annua L. and emended descriptions of Flavobacterium compostarboris and Flavobacterium procerum. | Zhao JC, Cheng J, Zhang Q, Gao ZW, Zhang MY, Zhang YX | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002701 | 2018 | Artemisia annua/*microbiology, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/genetics/isolation & purification, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 30297 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26638 | 28776041 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |