Name: Flavobacterium compostarboris 15C3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133726

Type strain:

Species: Flavobacterium compostarboris

Strain Designation: 15C3

Culture col. no.: KACC 14224, JCM 16527

Strain history: S. Kanaya 15C3.

NCBI tax ID(s): 659443 (species)

Section

Flavobacterium compostarboris 15C3 is an aerobe, Gram-negative, motile bacterium that was isolated from Compost.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium compostarboris**
	Full Scientific Name (LPSN)	Flavobacterium compostarboris Kim et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30297]	Gram stain	negative

[Ref.: #30297]	Cell length	4.2 µm

[Ref.: #30297]	Cell width	0.5 µm

[Ref.: #30297]	Cell shape	rod-shaped

[Ref.: #30297]	Motility	yes

[Ref.: #30297]	Flagellum arrangement	gliding

[Ref.: #30297]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30297]	growth	09-33 °C
[Ref.: #30297]	optimum	25 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #30297]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30297]			optimum	6.5
[Ref.: #30297]			growth	5.6-7.9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30297]

Oxygen tolerance

aerobe

[Ref.: #30297]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30297]		NaCl		growth	0-2	%

[Ref.: #67770]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30297]	arabinose ChEBI	+	carbon source
[Ref.: #30297]	esculin ChEBI	+	hydrolysis
[Ref.: #30297]	glucose ChEBI	+	carbon source
[Ref.: #30297]	maltose ChEBI	+	carbon source
[Ref.: #30297]	mannose ChEBI	+	carbon source
[Ref.: #30297]	N-acetylglucosamine ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #30297]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #30297]		indole ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #30297]	acid phosphatase	+	3.1.3.2
[Ref.: #30297]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30297]	catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30297]	Sample type/isolated from	Compost

[Ref.: #67770]	Sample type/isolated from	Leaf-and-branch compost at EXPO Park
[Ref.: #67770]	Geographic location (country and/or sea, region)	Osaka
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered

#Biodegradation

#Composting

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30297]	Flavobacterium compostarboris strain 15C3 16S ribosomal RNA gene, partial sequence	GQ281769	1461	GenBank	659443 tax ID

[Ref.: #30297]	GC-content	33.6 mol%
[Ref.: #67770]	GC-content	33.6 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #30297]

Culture collection no.

KACC 14224, JCM 16527

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium compostarboris sp. nov., isolated from leaf-and-branch compost, and emended descriptions of Flavobacterium hercynium, Flavobacterium resistens and Flavobacterium johnsoniae.	Kim JJ, Kanaya E, Weon HY, Koga Y, Takano K, Dunfield PF, Kwon SW, Kanaya S	Int J Syst Evol Microbiol	10.1099/ijs.0.032920-0	2011	*
Phylogeny	Flavobacterium artemisiae sp. nov., isolated from the rhizosphere of Artemisia annua L. and emended descriptions of Flavobacterium compostarboris and Flavobacterium procerum.	Zhao JC, Cheng J, Zhang Q, Gao ZW, Zhang MY, Zhang YX	Int J Syst Evol Microbiol	10.1099/ijsem.0.002701	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30297

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26638 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#26638

IJSEM 2018 2012 ( DOI 10.1099/ijs.0.032920-0 , PubMed 22021577 )

* These data were automatically processed and therefore are not curated

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