Strain identifier
BacDive ID: 133705
Type strain: 
Species: Amycolatopsis thermalba
Strain Designation: SF45
NCBI tax ID(s): 944492 (species)
version 8.1 (current version)
General
@ref: 30219
BacDive-ID: 133705
keywords: 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive, rod-shaped
description: Amycolatopsis thermalba SF45 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 944492
- Matching level: species
doi: 10.13145/bacdive133705.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Amycolatopsis
- species: Amycolatopsis thermalba
- full scientific name: Amycolatopsis thermalba Zucchi et al. 2012
@ref: 30219
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Pseudonocardiales
family: Pseudonocardiaceae
genus: Amycolatopsis
species: Amycolatopsis thermalba
strain designation: SF45
type strain: yes
Morphology
cell morphology
- @ref: 30219
- gram stain: positive
- cell length: 1.65 µm
- cell width: 0.35 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 30219
- production: yes
Culture and growth conditions
culture temp
- @ref: 30219
- growth: positive
- type: growth
- temperature: 20-50
culture pH
- @ref: 30219
- ability: positive
- type: growth
- pH: 04-10
- PH range: alkaliphile
Physiology and metabolism
oxygen tolerance
- @ref: 30219
- oxygen tolerance: aerobe
spore formation
- @ref: 30219
- spore formation: yes
halophily
- @ref: 30219
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 7 %
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30219 | 28757 | fructose | + | carbon source |
| 30219 | 28087 | glycogen | + | carbon source |
| 30219 | 37684 | mannose | + | carbon source |
| 30219 | 17151 | xylitol | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30219 | acid phosphatase | + | 3.1.3.2 |
| 30219 | alkaline phosphatase | + | 3.1.3.1 |
| 30219 | catalase | + | 1.11.1.6 |
| 30219 | gelatinase | + |
Isolation, sampling and environmental information
isolation
- @ref: 30219
- sample type: soil
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Sequence information
16S sequences
- @ref: 30219
- description: Amycolatopsis thermalba strain SF45 16S ribosomal RNA gene, partial sequence
- accession: HQ668525
- length: 1392
- database: nuccore
- NCBI tax ID: 944492
External links
@ref: 30219
culture collection no.: NCIMB 14705, NRRL B-24845
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21764982 | Amycolatopsis granulosa sp. nov., Amycolatopsis ruanii sp. nov. and Amycolatopsis thermalba sp. nov., thermophilic actinomycetes isolated from arid soils. | Zucchi TD, Tan GYA, Bonda ANV, Frank S, Kshetrimayum JD, Goodfellow M | Int J Syst Evol Microbiol | 10.1099/ijs.0.031039-0 | 2011 | Actinomycetales/*classification/genetics/*isolation & purification, DNA, Bacterial/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology | Genetics |
| 30319584 | Revisiting the Taxonomic Status of the Biomedically and Industrially Important Genus Amycolatopsis, Using a Phylogenomic Approach. | Sangal V, Goodfellow M, Blom J, Tan GYA, Klenk HP, Sutcliffe IC | Front Microbiol | 10.3389/fmicb.2018.02281 | 2018 |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 30219 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26562 | 28776041 |