Amycolatopsis thermalba (NCIMB 14705, NRRL B-24845, SF45)

Name: Amycolatopsis thermalba (NCIMB 14705, NRRL B-24845, SF45)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133705

Type strain

Strain Designation SF45

Culture col. no. NCIMB 14705 NRRL B-24845 SF45

NCBI tax ID(s) 944492

Special Collections Literature strains

Amycolatopsis thermalba SF45 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil.

spore-forming Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

Culture Collection Numbers

NCIMB 14705 NRRL B-24845 SF45

@ref 20215

Last LPSN update 2026-05-29 08:38:09

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Amycolatopsis

Species Amycolatopsis thermalba

Full scientific name Amycolatopsis thermalba Zucchi et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
30219	positive	1.65 µm	0.35 µm	rod-shaped
125439	positive					98.528

Pigmentation

30219

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
30219	positive	growth	20-50

Culture pH

@ref	Ability	Type	PH	PH range
30219	positive	growth	04-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30219	aerobe
125439	obligate aerobe	98.162

Spore formation

30219

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30219	NaCl	positive	growth	7 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30219	28757 ChEBI	fructose	+	carbon source
30219	28087 ChEBI	glycogen	+	carbon source
30219	37684 ChEBI	mannose	+	carbon source
30219	17151 ChEBI	xylitol	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30219	acid phosphatase	+	3.1.3.2
30219	alkaline phosphatase	+	3.1.3.1
30219	catalase	+	1.11.1.6
30219	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

30219

Sample typesoil

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM338521v1 assembly for Amycolatopsis thermalba NRRL B-24845	contig	GCA_003385215	944492.3	2854952679	944492	32.3

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30219	Amycolatopsis thermalba strain SF45 16S ribosomal RNA gene, partial sequence	HQ668525	1392		944492

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM338521v1 assembly for Amycolatopsis thermalba NRRL B-24845
NCBI: GCA_003385215

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	98.53	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.16	no
125439	motility	BacteriaNetⓘ	no	87.87	no
125439	spore_formation	BacteriaNetⓘ	yes	70.51	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Revisiting the Taxonomic Status of the Biomedically and Industrially Important Genus Amycolatopsis, Using a Phylogenomic Approach.	Sangal V, Goodfellow M, Blom J, Tan GYA, Klenk HP, Sutcliffe IC	Front Microbiol	10.3389/fmicb.2018.02281	2018
Phylogeny	Amycolatopsis granulosa sp. nov., Amycolatopsis ruanii sp. nov. and Amycolatopsis thermalba sp. nov., thermophilic actinomycetes isolated from arid soils.	Zucchi TD, Tan GYA, Bonda ANV, Frank S, Kshetrimayum JD, Goodfellow M	Int J Syst Evol Microbiol	10.1099/ijs.0.031039-0	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26562	IJSEM 1245 2012 ( DOI 10.1099/ijs.0.031039-0 , PubMed 21764982 )
#30219	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26562
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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Amycolatopsis thermalba (NCIMB 14705, NRRL B-24845, SF45)

Name and taxonomic classification

Culture Collection Numbers

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003385215

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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