Strain identifier

BacDive ID: 133702

Type strain: Yes

Species: Flavobacterium ummariense

Strain Designation: DS-12

NCBI tax ID(s): 913024 (species)

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General

@ref: 30214

BacDive-ID: 133702

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Flavobacterium ummariense DS-12 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 913024
  • Matching level: species

doi: 10.13145/bacdive133702.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium ummariense
  • full scientific name: Flavobacterium ummariense Lata et al. 2012

  • synonyms

    @refsynonym
    20215Paenimyroides ummariense
    20215Myroides ummariensis

@ref: 30214

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium ummariense

strain designation: DS-12

type strain: yes

Morphology

cell morphology

  • @ref: 30214
  • gram stain: negative
  • cell length: 1 µm
  • cell width: 0.5 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 30214
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30214positivegrowth25-37mesophilic
30214positiveoptimum28mesophilic

culture pH

@refabilitytypepH
30214positivegrowth06-08
30214positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 30214
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30214
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
30214NaClpositivegrowth<1 %
30214NaClpositiveoptimum0.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3021416449alanine+carbon source
3021428260galactose+carbon source
3021417716lactose+carbon source
3021417306maltose+carbon source
3021437684mannose+carbon source
30214506227N-acetylglucosamine+carbon source
3021426546rhamnose+carbon source
3021417822serine+carbon source
3021427082trehalose+carbon source
3021418222xylose+carbon source

enzymes

@refvalueactivityec
30214catalase+1.11.1.6
30214cytochrome oxidase+1.9.3.1
30214urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 30214
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Sequence information

16S sequences

  • @ref: 30214
  • description: Flavobacterium ummariense strain DS-12 16S ribosomal RNA gene, partial sequence
  • accession: HQ329187
  • length: 1434
  • database: nuccore
  • NCBI tax ID: 913024

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paenimyroides ummariense DS-12GCA_900115115contigncbi913024
66792Flavobacterium ummariense DS-122675903027draftimg913024

GC content

  • @ref: 30214
  • GC-content: 37.4

External links

@ref: 30214

culture collection no.: CCM 7847, MTCC 10766

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22199225Flavobacterium ummariense sp. nov., isolated from hexachlorocyclohexane-contaminated soil, and emended description of Flavobacterium ceti Vela et al. 2007.Lata P, Lal D, Lal RInt J Syst Evol Microbiol10.1099/ijs.0.030916-02011Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacterium/*classification/genetics/isolation & purification, Hexachlorocyclohexane/analysis, India, Molecular Sequence Data, *Phylogeny, Polyamines/analysis, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Soil Pollutants/analysisGenetics
Phylogeny23563232Flavobacterium marinum sp. nov., isolated from seawater.Song L, Liu H, Huang Y, Dai X, Zhou YInt J Syst Evol Microbiol10.1099/ijs.0.049080-02013Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacterium/*classification/genetics/isolation & purification, Indian Ocean, Molecular Sequence Data, Phosphatidylethanolamines/analysis, *Phylogeny, Polyenes/analysis, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny27902305Flavobacterium cloacae sp. nov., isolated from waste water.Liu H, Lu P, Zhu GInt J Syst Evol Microbiol10.1099/ijsem.0.0016842017Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, Waste Water/*microbiologyTranscriptome
Phylogeny33709901Flavobacterium baculatum sp. nov., a carotenoid and flexirubin-type pigment producing species isolated from flooded paddy field.Chhetri G, Kim J, Kim I, Kang M, Lee B, Jang W, Seo TInt J Syst Evol Microbiol10.1099/ijsem.0.0047362021
Phylogeny34596509Flavobacterium dauae sp. nov., isolated from rhizosphere soil of a tomato plant.Jung EJ, Choi SY, Lee SM, Song JY, Lee HJ, Kim E, Lee PA, Choi K, Kim JF, Lee SWInt J Syst Evol Microbiol10.1099/ijsem.0.0050332021Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Flavobacterium/classification/isolation & purification, *Lycopersicon esculentum/microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30214Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172655828776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes