Flavobacterium ummariense (CCM 7847, MTCC 10766, DS-12)

Name: Flavobacterium ummariense (CCM 7847, MTCC 10766, DS-12)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133702

Type strain

Strain Designation DS-12

Culture col. no. CCM 7847 MTCC 10766 DS-12

NCBI tax ID(s) 913024

Special Collections Literature strains

Flavobacterium ummariense DS-12 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

Culture Collection Numbers

CCM 7847 MTCC 10766 DS-12

@ref 20215

Last LPSN update 2026-02-09 11:32:00

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flavobacterium

Species Flavobacterium ummariense

Full scientific name Flavobacterium ummariense Lata et al. 2012

Synonyms (2)

Paenimyroides ummariense
"Myroides ummariensis"

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
30214	negative	1 µm	0.5 µm	rod-shaped
125439	negative					99.8

Pigmentation

30214

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
30214	positive	growth	25-37
30214	positive	optimum	28

Culture pH

@ref	Ability	Type	PH
30214	positive	optimum	7.5
30214	positive	growth	06-08

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30214	aerobe
125439	obligate aerobe	98.9

Spore formation

@ref	Spore formation	Confidence
30214
125439		96.6

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30214	NaCl	positive	growth	<1 %
30214	NaCl	positive	optimum	0.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30214	16449 ChEBI	alanine	+	carbon source
30214	28260 ChEBI	galactose	+	carbon source
30214	17716 ChEBI	lactose	+	carbon source
30214	17306 ChEBI	maltose	+	carbon source
30214	37684 ChEBI	mannose	+	carbon source
30214	506227 ChEBI	N-acetylglucosamine	+	carbon source
30214	26546 ChEBI	rhamnose	+	carbon source
30214	17822 ChEBI	serine	+	carbon source
30214	27082 ChEBI	trehalose	+	carbon source
30214	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30214	catalase	+	1.11.1.6
30214	cytochrome oxidase	+	1.9.3.1
30214	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

30214

Sample typesoil

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2675903027 annotated assembly for Paenimyroides ummariense DS-12	contig	GCA_900115115	913024.3	2675903027	913024	63.57

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30214	Flavobacterium ummariense strain DS-12 16S ribosomal RNA gene, partial sequence	HQ329187	1434		913024

GC content

30214

GC-content (mol%)37.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paenimyroides ummariense DS-12
NCBI: GCA_900115115

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.60	no
125439	motility	BacteriaNetⓘ	no	72.10	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.90	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes.	Garcia-Lopez M, Meier-Kolthoff JP, Tindall BJ, Gronow S, Woyke T, Kyrpides NC, Hahnke RL, Goker M.	Front Microbiol	10.3389/fmicb.2019.02083	2019
Phylogeny	Flavobacterium dauae sp. nov., isolated from rhizosphere soil of a tomato plant.	Jung EJ, Choi SY, Lee SM, Song JY, Lee HJ, Kim E, Lee PA, Choi K, Kim JF, Lee SW	Int J Syst Evol Microbiol	10.1099/ijsem.0.005033	2021
Phylogeny	Flavobacterium baculatum sp. nov., a carotenoid and flexirubin-type pigment producing species isolated from flooded paddy field.	Chhetri G, Kim J, Kim I, Kang M, Lee B, Jang W, Seo T	Int J Syst Evol Microbiol	10.1099/ijsem.0.004736	2021
Phylogeny	Flavobacterium cloacae sp. nov., isolated from waste water.	Liu H, Lu P, Zhu G	Int J Syst Evol Microbiol	10.1099/ijsem.0.001684	2017
Phylogeny	Flavobacterium marinum sp. nov., isolated from seawater.	Song L, Liu H, Huang Y, Dai X, Zhou Y	Int J Syst Evol Microbiol	10.1099/ijs.0.049080-0	2013
Phylogeny	Flavobacterium ummariense sp. nov., isolated from hexachlorocyclohexane-contaminated soil, and emended description of Flavobacterium ceti Vela et al. 2007.	Lata P, Lal D, Lal R	Int J Syst Evol Microbiol	10.1099/ijs.0.030916-0	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26558	IJSEM 2674 2012 ( DOI 10.1099/ijs.0.030916-0 , PubMed 22199225 )
#30214	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26558
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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Flavobacterium ummariense (CCM 7847, MTCC 10766, DS-12)

Name and taxonomic classification

Culture Collection Numbers

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900115115

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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