Strain identifier

BacDive ID: 133669

Type strain: Yes

Species: Marinobacter xestospongiae

Strain Designation: UST090418-1611

Strain history: O. O. Lee UST090418-1611.

NCBI tax ID(s): 994319 (species)

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General

@ref: 30049

BacDive-ID: 133669

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Marinobacter xestospongiae UST090418-1611 is an aerobe, Gram-negative, motile bacterium that was isolated from Marine sponge.

NCBI tax id

  • NCBI tax id: 994319
  • Matching level: species

strain history

  • @ref: 67770
  • history: O. O. Lee UST090418-1611.

doi: 10.13145/bacdive133669.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Marinobacter
  • species: Marinobacter xestospongiae
  • full scientific name: Marinobacter xestospongiae Lee et al. 2012

  • synonyms

    • @ref: 20215
    • synonym: Marinobacter xestospongiae

@ref: 30049

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Marinobacter

species: Marinobacter xestospongiae

strain designation: UST090418-1611

type strain: yes

Morphology

cell morphology

  • @ref: 30049
  • gram stain: negative
  • cell length: 2.25 µm
  • cell width: 0.7 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 30049
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30049positivegrowth15-42
30049positiveoptimum32mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
30049positivegrowth05-10alkaliphile
30049positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 30049
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30049
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
30049NaClpositivegrowth0.5-6 %
30049NaClpositiveoptimum2 %

observation

  • @ref: 67770
  • observation: quinones: Q-9

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3004930089acetate+carbon source
3004916449alanine+carbon source
3004916236ethanol+carbon source
3004929987glutamate+carbon source
3004917754glycerol+carbon source
3004917272propionate+carbon source
3004915361pyruvate+carbon source
3004930031succinate+carbon source
3004917632nitrate+reduction

metabolite production

  • @ref: 30049
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 30049
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
30049alkaline phosphatase+3.1.3.1
30049catalase+1.11.1.6
30049cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample type
30049Marine sponge
67770The Red Sea coast of Saudi Arabia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Host#Invertebrates (Other)#Porifera (Sponges)

taxonmaps

  • @ref: 69479
  • File name: preview.99_13498.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_89;96_693;97_4347;98_10194;99_13498&stattab=map
  • Last taxonomy: Marinobacter xestospongiae subclade
  • 16S sequence: HQ203044
  • Sequence Identity:
  • Total samples: 631
  • soil counts: 19
  • aquatic counts: 546
  • animal counts: 62
  • plant counts: 4

Sequence information

16S sequences

  • @ref: 30049
  • description: Marinobacter xestospongiae strain UST090418-1611 16S ribosomal RNA gene, partial sequence
  • accession: HQ203044
  • length: 1468
  • database: nuccore
  • NCBI tax ID: 994319

Genome sequences

  • @ref: 66792
  • description: Marinobacter xestospongiae JCM 17469
  • accession: GCA_023156385
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 994319

GC content

@refGC-contentmethod
3004957.1
6777057.1high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedyes95.826no
gram-positiveno98.725no
anaerobicno98.341yes
aerobicyes92.534yes
halophileyes87.029no
spore-formingno93.62yes
motileyes93.535no
glucose-fermentno86.179no
thermophileno98.992no
glucose-utilyes50.569no

External links

@ref: 30049

culture collection no.: JCM 17469, NRRL B-59512

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22003037Marinobacter xestospongiae sp. nov., isolated from the marine sponge Xestospongia testudinaria collected from the Red Sea.Lee OO, Lai PY, Wu HX, Zhou XJ, Miao L, Wang H, Qian PYInt J Syst Evol Microbiol10.1099/ijs.0.028811-02011Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids, Indian Ocean, Marinobacter/*classification/genetics/isolation & purification, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Xestospongia/*microbiologyGenetics
Phylogeny25835026Marinobacter nitratireducens sp. nov., a halophilic and lipolytic bacterium isolated from coastal surface sea water.Vaidya B, Kumar R, Korpole S, Tanuku NRS, Pinnaka AKInt J Syst Evol Microbiol10.1099/ijs.0.0002182015Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, India, Marinobacter/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry, Water MicrobiologyGenetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30049Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172641028776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/