Marinobacter xestospongiae (JCM 17469, NRRL B-59512, UST090418-1611)

Name: Marinobacter xestospongiae (JCM 17469, NRRL B-59512, UST090418-1611)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133669

Type strain

Strain Designation UST090418-1611

Culture col. no. JCM 17469 NRRL B-59512 UST090418-1611

NCBI tax ID(s) 994319

Special Collections JCM Literature strains

History O. O. Lee UST090418-1611.

Links

Marinobacter xestospongiae UST090418-1611 is an aerobe, Gram-negative, motile bacterium that was isolated from Marine sponge.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 133753

JCM 17469

@ref 20215

Last LPSN update 2026-02-09 11:32:00

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Alteromonadaceae

Genus Marinobacter

Species Marinobacter xestospongiae

Full scientific name Marinobacter xestospongiae Lee et al. 2012

Synonyms (1)

"Marinobacter xestospongiae"

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
30049	negative	2.25 µm	0.7 µm	rod-shaped
125438	negative					98.8

Pigmentation

30049

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
30049	positive	growth	15-42
30049	positive	optimum	32
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
30049	positive	optimum	7.5
30049	positive	growth	05-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

30049

Oxygen toleranceaerobe

Spore formation

30049

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30049	NaCl	positive	growth	0.5-6 %
30049	NaCl	positive	optimum	2 %

Observation

67770

Observationquinones: Q-9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30049	30089 ChEBI	acetate	+	carbon source
30049	16449 ChEBI	alanine	+	carbon source
30049	16236 ChEBI	ethanol	+	carbon source
30049	29987 ChEBI	glutamate	+	carbon source
30049	17754 ChEBI	glycerol	+	carbon source
30049	17632 ChEBI	nitrate	+	reduction
30049	17272 ChEBI	propionate	+	carbon source
30049	15361 ChEBI	pyruvate	+	carbon source
30049	30031 ChEBI	succinate	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
30049	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
30049	35581 ChEBI	indole	+

Enzymes

@ref	Value	Activity	Ec
30049	alkaline phosphatase	+	3.1.3.1
30049	catalase	+	1.11.1.6
30049	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Porifera (Sponges)

Isolation

@ref	Sample type
30049	Marine sponge
67770	The Red Sea coast of Saudi Arabia

Taxonmaps

69479

Global distribution of 16S sequence HQ203044 (>99% sequence identity) for Marinobacter xestospongiae subclade from Microbeatlas

Aquatic Samples	546
Soil Samples	19
Animal Samples	62
Plant Samples	4
Total Samples	631

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2315638v1 assembly for Marinobacter xestospongiae JCM 17469	contig	GCA_023156385	994319.4	8054179613	994319	60.65
124043	ASM3953775v1 assembly for Marinobacter xestospongiae JCM 17469	scaffold	GCA_039537755			994319	59.93

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30049	Marinobacter xestospongiae strain UST090418-1611 16S ribosomal RNA gene, partial sequence	HQ203044	1468		994319

GC content

@ref	GC-content (mol%)	Method
30049	57.1
67770	57.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Marinobacter xestospongiae JCM 17469
NCBI: GCA_023156385.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.80	yes
125438	anaerobic	anaerobicⓘ	no	97.75	no
125438	aerobic	aerobicⓘ	yes	85.83	yes
125438	spore-forming	spore-formingⓘ	no	89.23	yes
125438	thermophilic	thermophileⓘ	no	100.00	yes
125438	flagellated	motile2+ⓘ	yes	86.87	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinobacter nitratireducens sp. nov., a halophilic and lipolytic bacterium isolated from coastal surface sea water.	Vaidya B, Kumar R, Korpole S, Tanuku NRS, Pinnaka AK	Int J Syst Evol Microbiol	10.1099/ijs.0.000218	2015
Phylogeny	Marinobacter xestospongiae sp. nov., isolated from the marine sponge Xestospongia testudinaria collected from the Red Sea.	Lee OO, Lai PY, Wu HX, Zhou XJ, Miao L, Wang H, Qian PY	Int J Syst Evol Microbiol	10.1099/ijs.0.028811-0	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26410	IJSEM 1980 2012 ( DOI 10.1099/ijs.0.028811-0 , PubMed 22003037 )
#30049	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26410
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Marinobacter xestospongiae (JCM 17469, NRRL B-59512, UST090418-1611)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_023156385

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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