Strain identifier
BacDive ID: 133661
Type strain: 
Species: Swaminathania salitolerans
Strain Designation: PA51
NCBI tax ID(s): 1307931 (strain), 182838 (species)
version 9 (current version)
General
@ref: 30003
BacDive-ID: 133661
keywords: 16S sequence, Bacteria, Gram-negative, motile, rod-shaped
description: Swaminathania salitolerans PA51 is a Gram-negative, motile, rod-shaped bacterium that was isolated from plant associated.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 182838 | species |
| 1307931 | strain |
doi: 10.13145/bacdive133661.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Swaminathania
- species: Swaminathania salitolerans
- full scientific name: Swaminathania salitolerans Loganathan and Nair 2004
@ref: 30003
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Acetobacteraceae
genus: Swaminathania
species: Swaminathania salitolerans
strain designation: PA51
type strain: yes
Morphology
cell morphology
- @ref: 30003
- gram stain: negative
- cell length: 2.5 µm
- cell width: 0.8 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 30003
- production: yes
Culture and growth conditions
culture pH
- @ref: 30003
- ability: positive
- type: optimum
- pH: 3.5
- PH range: acidophile
Physiology and metabolism
halophily
- @ref: 30003
- salt: NaCl
- growth: positive
- tested relation: optimum
- concentration: 3 %
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30003 | 30089 | acetate | + | carbon source |
| 30003 | 22599 | arabinose | + | carbon source |
| 30003 | 28757 | fructose | + | carbon source |
| 30003 | 28260 | galactose | + | carbon source |
| 30003 | 29987 | glutamate | + | carbon source |
| 30003 | 17754 | glycerol | + | carbon source |
| 30003 | 24996 | lactate | + | carbon source |
| 30003 | 29864 | mannitol | + | carbon source |
| 30003 | 37684 | mannose | + | carbon source |
| 30003 | 30911 | sorbitol | + | carbon source |
enzymes
- @ref: 30003
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
- @ref: 30003
- sample type: plant associated
isolation source categories
- Cat1: #Host
- Cat2: #Plants
taxonmaps
- @ref: 69479
- File name: preview.99_60065.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_661;97_765;98_3270;99_60065&stattab=map
- Last taxonomy: Asaia
- 16S sequence: AF459454
- Sequence Identity:
- Total samples: 293
- soil counts: 25
- aquatic counts: 5
- animal counts: 239
- plant counts: 24
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 30003 | Halobharath swaminathanianus strain PA 51 16S ribosomal RNA gene, partial sequence | AF459454 | 1455 | nuccore | 182838 |
| 124043 | Swaminathania salitolerans genes for 16S rRNA, 16S-23S rRNA ITS, 23S rRNA, partial and complete sequence. | AB220163 | 763 | nuccore | 182838 |
GC content
- @ref: 30003
- GC-content: 58.75
External links
@ref: 30003
culture collection no.: LMG 21291, MTCC 3852
straininfo link
- @ref: 91548
- straininfo: 85582
literature
- topic: Phylogeny
- Pubmed-ID: 15280289
- title: Swaminathania salitolerans gen. nov., sp. nov., a salt-tolerant, nitrogen-fixing and phosphate-solubilizing bacterium from wild rice (Porteresia coarctata Tateoka).
- authors: Loganathan P, Nair S
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.02817-0
- year: 2004
- mesh: Acetic Acid/pharmacology, Acetobacteraceae/*classification/cytology/*isolation & purification/physiology, Base Composition, Carbohydrate Metabolism, Culture Media/chemistry, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry, Ethanol/metabolism, Fatty Acids/analysis/isolation & purification, Flagella, Genes, rRNA, Gentian Violet, Glutamic Acid/metabolism, Growth Inhibitors/pharmacology, Hydrogen-Ion Concentration, Molecular Sequence Data, Movement, Nitrates/pharmacology, Phenazines, Phylogeny, Plant Roots/microbiology, Plant Stems/microbiology, Poaceae/*microbiology, Potassium Compounds/pharmacology, Quinones/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Sodium Chloride/pharmacology
- topic2: Enzymology
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 30003 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26367 | 28776041 |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
| 91548 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID85582.1 | ||
| 124043 | Dr. Isabel Schober, Dr. Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy |