Strain identifier

BacDive ID: 133660

Type strain: Yes

Species: Treponema putidum

NCBI tax ID(s): 221027 (species)

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General

@ref: 29997

BacDive-ID: 133660

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, motile, coccus-shaped

description: Treponema putidum ATCC 700334 is an anaerobe, motile, coccus-shaped bacterium that was isolated from human - mouth.

NCBI tax id

  • NCBI tax id: 221027
  • Matching level: species

doi: 10.13145/bacdive133660.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/spirochaetota
  • domain: Bacteria
  • phylum: Spirochaetota
  • class: Spirochaetia
  • order: Spirochaetales
  • family: Treponemataceae
  • genus: Treponema
  • species: Treponema putidum
  • full scientific name: Treponema putidum Wyss et al. 2004

@ref: 29997

domain: Bacteria

phylum: Spirochaetes

class: Spirochaetes

order: Spirochaetales

family: Spirochaetaceae

genus: Treponema

species: Treponema putidum

type strain: yes

Morphology

cell morphology

  • @ref: 29997
  • cell length: 10 µm
  • cell width: 0.25 µm
  • cell shape: coccus-shaped
  • motility: yes

Physiology and metabolism

oxygen tolerance

  • @ref: 29997
  • oxygen tolerance: anaerobe

enzymes

@refvalueactivityec
29997acid phosphatase+3.1.3.2
29997alkaline phosphatase+3.1.3.1
29997alpha-galactosidase+3.2.1.22

Isolation, sampling and environmental information

isolation

  • @ref: 29997
  • sample type: human - mouth

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Oral cavity and airways#Mouth

taxonmaps

  • @ref: 69479
  • File name: preview.99_3288.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_67;96_784;97_913;98_1070;99_3288&stattab=map
  • Last taxonomy: Treponema putidum
  • 16S sequence: AJ543428
  • Sequence Identity:
  • Total samples: 1029
  • soil counts: 4
  • aquatic counts: 6
  • animal counts: 1012
  • plant counts: 7

Sequence information

16S sequences

  • @ref: 29997
  • description: Treponema putidum 16S rRNA gene, strain ATCC 700334
  • accession: AJ543428
  • length: 1408
  • database: nuccore
  • NCBI tax ID: 221027

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Treponema putidum ATCC 700334GCA_007830595scaffoldncbi221027
66792Treponema putidum strain ATCC 700334221027.34wgspatric221027
66792Treponema putidum strain OMZ 758 (ATCC 700334)221027.3completepatric221027
66792Treponema putidum strain OMZ 758 strain OMZ 758 (ATCC 700334)221027.9plasmidpatric221027
66792Treponema putidum ATCC 7003342596583603draftimg221027
66792Treponema putidum OMZ 758 (ATCC 700334)GCA_000755145completencbi221027

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes80.971yes
gram-positiveno92.721no
anaerobicyes99.059yes
aerobicno98.564no
halophileno85.864no
spore-formingno88.624no
glucose-utilyes79.946no
flagellatedno89.985no
thermophileno97.673no
glucose-fermentyes70.758no

External links

@ref: 29997

culture collection no.: ATCC 700334, CIP 108088, OMZ 758

straininfo link

  • @ref: 91547
  • straininfo: 97534

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15280279Treponema putidum sp. nov., a medium-sized proteolytic spirochaete isolated from lesions of human periodontitis and acute necrotizing ulcerative gingivitis.Wyss C, Moter A, Choi BK, Dewhirst FE, Xue Y, Schupbach P, Gobel UB, Paster BJ, Guggenheim BInt J Syst Evol Microbiol10.1099/ijs.0.02806-02004Antigens, Bacterial/analysis/immunology, Bacterial Proteins/analysis/immunology, Carbohydrate Metabolism, Chymotrypsin/metabolism, Culture Media/chemistry, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry, Flagella/chemistry/immunology, Flagellin/analysis/immunology, Genes, rRNA, Gingivitis, Necrotizing Ulcerative/*microbiology, Humans, Molecular Sequence Data, Movement, Neuraminidase/metabolism, Peptide Hydrolases/metabolism, Periodontitis/*microbiology, Phylogeny, Proteins/metabolism, Proteome, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Sucrose/metabolism, Treponema/*classification/cytology/*isolation & purification/physiologyMetabolism
Genetics25342686Complete Genome Sequence of the Oral Spirochete Bacterium Treponema putidum Strain OMZ 758T (ATCC 700334T).Lacap-Bugler DC, Jiang J, Huo YB, Chan Y, Leung FC, Watt RMGenome Announc10.1128/genomeA.01076-142014

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
29997Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172636228776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91547Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID97534.1