Treponema putidum (ATCC 700334, CIP 108088, OMZ 758)

Name: Treponema putidum (ATCC 700334, CIP 108088, OMZ 758)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133660

Type strain

Culture col. no. ATCC 700334 CIP 108088 OMZ 758

NCBI tax ID(s) 221027

Special Collections CIP Literature strains

Links

Treponema putidum ATCC 700334 is an anaerobe, motile, coccus-shaped bacterium that was isolated from human - mouth.

motile coccus-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 97534

ATCC 700334,CIP 108088

@ref 20215

Last LPSN update 2026-02-09 11:32:00

Domain Bacteria

Phylum Spirochaetota

Class Spirochaetia

Order Spirochaetales

Family Treponemataceae

Genus Treponema

Species Treponema putidum

Full scientific name Treponema putidum Wyss et al. 2004

Morphology

Cell morphology

@ref	Cell length	Cell width	Cell shape	Motility	Gram stain	Confidence
29997	10 µm	0.25 µm	coccus-shaped
125439					negative	99.9

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29997	anaerobe
125439	obligate aerobe	95.1

Spore formation

@ref	Spore formation	Confidence
125439		99.6

Enzymes

@ref	Value	Activity	Ec
29997	acid phosphatase	+	3.1.3.2
29997	alkaline phosphatase	+	3.1.3.1
29997	alpha-galactosidase	+	3.2.1.22

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Mouth

Isolation

29997

Sample typehuman - mouth

Taxonmaps

69479

Global distribution of 16S sequence AJ543428 (>99% sequence identity) for Treponema putidum from Microbeatlas

Aquatic Samples	6
Soil Samples	4
Animal Samples	1012
Plant Samples	7
Total Samples	1029

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM75514v1 assembly for Treponema putidum OMZ 758	complete	GCA_000755145	221027.38	2630968369	221027	96.75
66792	ASM783059v1 assembly for Treponema putidum ATCC 700334	scaffold	GCA_007830595	221027.34	2596583603	221027	69.89
66792	Treponema putidum strain OMZ 758 (ATCC 700334)	complete		221027.3		221027	53.9

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
29997	Treponema putidum 16S rRNA gene, strain ATCC 700334	AJ543428	1408		221027
124043	Treponema putidum strain OMZ 758 16S ribosomal RNA gene, complete sequence.	KP101531	1496		221027

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Treponema putidum strain OMZ 758 (ATCC 700334)
PATRIC: 221027.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.60	no
125439	motility	BacteriaNetⓘ	no	78.80	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Treponema putidum strain OMZ 758 (ATCC 700334)
PATRIC: 221027.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	83.19	no
125438	anaerobic	anaerobicⓘ	yes	88.23	yes
125438	spore-forming	spore-formingⓘ	no	79.81	no
125438	aerobic	aerobicⓘ	no	98.38	no
125438	thermophilic	thermophileⓘ	no	91.49	no
125438	flagellated	motile2+ⓘ	yes	57.01	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Multilocus Sequence Analysis of Phylogroup 1 and 2 Oral Treponeme Strains.	Huo YB, Chan Y, Lacap-Bugler DC, Mo S, Woo PCY, Leung WK, Watt RM.	Appl Environ Microbiol	10.1128/aem.02499-16	2017
Phylogeny	Targeting the treponemal microbiome of digital dermatitis infections by high-resolution phylogenetic analyses and comparison with fluorescent in situ hybridization.	Klitgaard K, Foix Breto A, Boye M, Jensen TK.	J Clin Microbiol	10.1128/jcm.00320-13	2013
	The occurrence of Treponema spp. in gingival plaque from dogs with varying degree of periodontal disease.	Nises J, Rosander A, Pettersson A, Backhans A.	PLoS One	10.1371/journal.pone.0201888	2018
Genetics	Complete Genome Sequence of the Oral Spirochete Bacterium Treponema putidum Strain OMZ 758T (ATCC 700334T).	Lacap-Bugler DC, Jiang J, Huo YB, Chan Y, Leung FC, Watt RM	Genome Announc	10.1128/genomeA.01076-14	2014
Phylogeny	Treponema putidum sp. nov., a medium-sized proteolytic spirochaete isolated from lesions of human periodontitis and acute necrotizing ulcerative gingivitis.	Wyss C, Moter A, Choi BK, Dewhirst FE, Xue Y, Schupbach P, Gobel UB, Paster BJ, Guggenheim B	Int J Syst Evol Microbiol	10.1099/ijs.0.02806-0	2004

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26362	IJSEM 1117 2004 ( DOI 10.1099/ijs.0.02806-0 , PubMed 15280279 )
#29997	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26362
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Treponema putidum (ATCC 700334, CIP 108088, OMZ 758)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Spore formation

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000755145

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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