Strain identifier
BacDive ID: 133647
Type strain: 
Species: Rhodopseudomonas harwoodiae
Strain Designation: JA531
NCBI tax ID(s): 759839 (species)
version 8.1 (current version)
General
@ref: 29925
BacDive-ID: 133647
keywords: 16S sequence, Bacteria, motile, rod-shaped
description: Rhodopseudomonas harwoodiae JA531 is a motile, rod-shaped bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 759839
- Matching level: species
doi: 10.13145/bacdive133647.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Nitrobacteraceae
- genus: Rhodopseudomonas
- species: Rhodopseudomonas harwoodiae
- full scientific name: Rhodopseudomonas harwoodiae Venkata Ramana et al. 2012
@ref: 29925
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Bradyrhizobiaceae
genus: Rhodopseudomonas
species: Rhodopseudomonas harwoodiae
strain designation: JA531
type strain: yes
Morphology
cell morphology
- @ref: 29925
- cell length: 2.75 µm
- cell width: 0.9 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 29925
- production: yes
Culture and growth conditions
culture temp
- @ref: 29925
- growth: positive
- type: growth
- temperature: 25-40
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 29925 | positive | growth | 05-09 | alkaliphile |
| 29925 | positive | optimum | 6.75 |
Physiology and metabolism
halophily
- @ref: 29925
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: <4 %
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29925 | 17754 | glycerol | + | carbon source |
| 29925 | 15792 | malonate | + | carbon source |
| 29925 | 17272 | propionate | + | carbon source |
| 29925 | 30031 | succinate | + | carbon source |
| 29925 | 31011 | valerate | + | carbon source |
Isolation, sampling and environmental information
isolation
- @ref: 29925
- sample type: soil
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_1603.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_86;96_297;97_329;98_429;99_1603&stattab=map
- Last taxonomy: Rhodopseudomonas
- 16S sequence: FN813512
- Sequence Identity:
- Total samples: 892
- soil counts: 289
- aquatic counts: 228
- animal counts: 211
- plant counts: 164
Sequence information
16S sequences
- @ref: 29925
- description: Rhodopseudomonas harwoodiae partial 16S rRNA gene, strain JA531T, isolate 4P
- accession: FN813512
- length: 1365
- database: nuccore
- NCBI tax ID: 759839
GC content
- @ref: 29925
- GC-content: 62.4
External links
@ref: 29925
culture collection no.: NBRC 107575, KCTC 5841
literature
- topic: Phylogeny
- Pubmed-ID: 21986724
- title: Descriptions of Rhodopseudomonas parapalustris sp. nov., Rhodopseudomonas harwoodiae sp. nov. and Rhodopseudomonas pseudopalustris sp. nov., and emended description of Rhodopseudomonas palustris.
- authors: Ramana VV, Chakravarthy SK, Raj PS, Kumar BV, Shobha E, Ramaprasad EVV, Sasikala C, Ramana CV
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.026815-0
- year: 2011
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fresh Water/microbiology, Geologic Sediments/microbiology, India, Lipids/analysis, Molecular Sequence Data, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodopseudomonas/*classification/genetics/isolation & purification, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 29925 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26296 | 28776041 |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |