Name: Rhodopseudomonas harwoodiae JA531
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133647

Type strain:

Species: Rhodopseudomonas harwoodiae

Strain Designation: JA531

Culture col. no.: NBRC 107575, KCTC 5841

NCBI tax ID(s): 759839 (species)

Section

Rhodopseudomonas harwoodiae JA531 is a motile, rod-shaped bacterium that was isolated from soil.

motile
rod-shaped
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Nitrobacteraceae*
	Genus	*Rhodopseudomonas*
	Species	**Rhodopseudomonas harwoodiae**
	Full Scientific Name (LPSN)	Rhodopseudomonas harwoodiae Venkata Ramana et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #29925]	Cell length	2.75 µm

[Ref.: #29925]	Cell width	0.9 µm

[Ref.: #29925]	Cell shape	rod-shaped

[Ref.: #29925]	Motility	yes

[Ref.: #29925]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #29925]			growth	25-40 °C

	pH	Kind of pH		pH
[Ref.: #29925]			optimum	6.75
[Ref.: #29925]			growth	05-09

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29925]		NaCl		growth	<4	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29925]	glycerol ChEBI	+	carbon source
[Ref.: #29925]	malonate ChEBI	+	carbon source
[Ref.: #29925]	propionate ChEBI	+	carbon source
[Ref.: #29925]	succinate ChEBI	+	carbon source
[Ref.: #29925]	valerate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29925]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FN813512 (>99% sequence identity) for Rhodopseudomonas from Microbeatlas

Aquatic Samples	228
Soil Samples	289
Animal Samples	211
Plant Samples	164
Total Samples	892

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29925]	Rhodopseudomonas harwoodiae partial 16S rRNA gene, strain JA531T, isolate 4P	FN813512	1365	GenBank	759839 tax ID

[Ref.: #29925]

GC-content

62.4 mol%

Availability in culture collections External links

[Ref.: #29925]

Culture collection no.

NBRC 107575, KCTC 5841

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Descriptions of Rhodopseudomonas parapalustris sp. nov., Rhodopseudomonas harwoodiae sp. nov. and Rhodopseudomonas pseudopalustris sp. nov., and emended description of Rhodopseudomonas palustris.	Ramana VV, Chakravarthy SK, Raj PS, Kumar BV, Shobha E, Ramaprasad EVV, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijs.0.026815-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29925

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26296 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#26296

IJSEM 1790 2012 ( DOI 10.1099/ijs.0.026815-0 , PubMed 21986724 )

* These data were automatically processed and therefore are not curated

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