Strain identifier
BacDive ID: 133641
Type strain: 
Species: Sphingobacterium kyonggiense
Strain Designation: 02/01/02
Strain history: S.-S. Lee 2-1-2 (=KEMC 2241-005).
NCBI tax ID(s): 714075 (species)
version 8.1 (current version)
General
@ref: 29895
BacDive-ID: 133641
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Sphingobacterium kyonggiense 02/01/02 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 714075
- Matching level: species
strain history
- @ref: 67770
- history: S.-S. Lee 2-1-2 (=KEMC 2241-005).
doi: 10.13145/bacdive133641.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Sphingobacteriia
- order: Sphingobacteriales
- family: Sphingobacteriaceae
- genus: Sphingobacterium
- species: Sphingobacterium kyonggiense
- full scientific name: Sphingobacterium kyonggiense Choi and Lee 2012
@ref: 29895
domain: Bacteria
phylum: Bacteroidetes
class: Sphingobacteriia
order: Sphingobacteriales
family: Sphingobacteriaceae
genus: Sphingobacterium
species: Sphingobacterium kyonggiense
strain designation: 02/01/02
type strain: yes
Morphology
cell morphology
- @ref: 29895
- gram stain: negative
- cell length: 1.6 µm
- cell width: 0.75 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 29895
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 29895 | positive | growth | 15-42 | |
| 29895 | positive | optimum | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 29895 | positive | growth | 06-10 | alkaliphile |
| 29895 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 29895
- oxygen tolerance: aerobe
spore formation
- @ref: 29895
- spore formation: no
halophily
- @ref: 29895
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-4 %
observation
- @ref: 67770
- observation: quinones: MK-7
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29895 | 17234 | glucose | + | carbon source |
| 29895 | 28087 | glycogen | + | carbon source |
| 29895 | 17306 | maltose | + | carbon source |
| 29895 | 28053 | melibiose | + | carbon source |
| 29895 | 506227 | N-acetylglucosamine | + | carbon source |
| 29895 | 26271 | proline | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29895 | acid phosphatase | + | 3.1.3.2 |
| 29895 | alkaline phosphatase | + | 3.1.3.1 |
| 29895 | alpha-galactosidase | + | 3.2.1.22 |
| 29895 | catalase | + | 1.11.1.6 |
| 29895 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 29895 | soil | |||
| 67770 | Perchloroethylen/trichloroethene-contaminated soil in Suwon | Republic of Korea | KOR | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_79513.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15366;96_3818;97_4710;98_55430;99_79513&stattab=map
- Last taxonomy: Sphingobacterium kyonggiense subclade
- 16S sequence: GU358699
- Sequence Identity:
- Total samples: 1762
- soil counts: 137
- aquatic counts: 366
- animal counts: 1128
- plant counts: 131
Sequence information
16S sequences
- @ref: 29895
- description: Sphingobacterium kyonggiense strain KEMC 2241-005 16S ribosomal RNA gene, partial sequence
- accession: GU358699
- length: 1377
- database: nuccore
- NCBI tax ID: 714075
GC content
| @ref | GC-content | method |
|---|---|---|
| 29895 | 36.6 | |
| 67770 | 36.6 | high performance liquid chromatography (HPLC) |
External links
@ref: 29895
culture collection no.: KEMC 2241-005, JCM 16704
literature
- topic: Phylogeny
- Pubmed-ID: 22180612
- title: Sphingobacterium kyonggiense sp. nov., isolated from chloroethene-contaminated soil, and emended descriptions of Sphingobacterium daejeonense and Sphingobacterium mizutaii.
- authors: Choi HA, Lee SS
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.024737-0
- year: 2011
- mesh: Bacterial Typing Techniques, Base Composition, Ceramides/analysis, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Soil Pollutants, Sphingobacterium/*classification/genetics/isolation & purification, Tetrachloroethylene, Trichloroethylene, Vitamin K 2/analogs & derivatives/analysis
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 29895 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26268 | 28776041 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |