Sphingobacterium kyonggiense (KEMC 2241-005, JCM 16704, 02/01/02)

Name: Sphingobacterium kyonggiense (KEMC 2241-005, JCM 16704, 02/01/02)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133641

Type strain

Strain Designation 02/01/02

Culture col. no. KEMC 2241-005 JCM 16704 02/01/02

NCBI tax ID(s) 714075

Special Collections JCM Literature strains

History S.-S. Lee 2-1-2 (=KEMC 2241-005).

Links

Sphingobacterium kyonggiense 02/01/02 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 393417

JCM 16704

@ref 20215

Last LPSN update 2026-02-09 11:31:59

Domain Bacteria

Phylum Bacteroidota

Class Sphingobacteriia

Order Sphingobacteriales

Family Sphingobacteriaceae

Genus Sphingobacterium

Species Sphingobacterium kyonggiense

Full scientific name Sphingobacterium kyonggiense Choi and Lee 2012

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
29895	negative	1.6 µm	0.75 µm	rod-shaped

Pigmentation

29895

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
29895	positive	growth	15-42
29895	positive	optimum	30
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
29895	positive	optimum	7.5
29895	positive	growth	06-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

29895

Oxygen toleranceaerobe

Spore formation

29895

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29895	NaCl	positive	growth	0-4 %

Observation

67770

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29895	17234 ChEBI	glucose	+	carbon source
29895	28087 ChEBI	glycogen	+	carbon source
29895	17306 ChEBI	maltose	+	carbon source
29895	28053 ChEBI	melibiose	+	carbon source
29895	506227 ChEBI	N-acetylglucosamine	+	carbon source
29895	26271 ChEBI	proline	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29895	acid phosphatase	+	3.1.3.2
29895	alkaline phosphatase	+	3.1.3.1
29895	alpha-galactosidase	+	3.2.1.22
29895	catalase	+	1.11.1.6
29895	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
29895	soil
67770	Perchloroethylen/trichloroethene-contaminated soil in Suwon	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence GU358699 (>99% sequence identity) for Sphingobacterium kyonggiense subclade from Microbeatlas

Aquatic Samples	366
Soil Samples	137
Animal Samples	1128
Plant Samples	131
Total Samples	1762

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3953682v1 assembly for Sphingobacterium kyonggiense JCM 16704	scaffold	GCA_039536825	714075	60.47

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
29895	Sphingobacterium kyonggiense strain KEMC 2241-005 16S ribosomal RNA gene, partial sequence	GU358699	1377		714075

GC content

@ref	GC-content (mol%)	Method
29895	36.6
67770	36.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingobacterium kyonggiense sp. nov., isolated from chloroethene-contaminated soil, and emended descriptions of Sphingobacterium daejeonense and Sphingobacterium mizutaii.	Choi HA, Lee SS	Int J Syst Evol Microbiol	10.1099/ijs.0.024737-0	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26268	IJSEM 2559 2012 ( DOI 10.1099/ijs.0.024737-0 , PubMed 22180612 )
#29895	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26268
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sphingobacterium kyonggiense (KEMC 2241-005, JCM 16704, 02/01/02)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_039536825

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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