Strain identifier

BacDive ID: 133599

Type strain: Yes

Species: Aequorivita aestuarii

Strain Designation: JC2436

Strain history: <- J Chun, Seoul Nat. Univ.

NCBI tax ID(s): 524290 (species)

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General

@ref: 29701

BacDive-ID: 133599

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Aequorivita aestuarii JC2436 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from tidal flat sediment.

NCBI tax id

  • NCBI tax id: 524290
  • Matching level: species

strain history

@refhistory
67770J. Chun JC2436.
67771<- J Chun, Seoul Nat. Univ.

doi: 10.13145/bacdive133599.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Aequorivita
  • species: Aequorivita aestuarii
  • full scientific name: Aequorivita aestuarii (Kim et al. 2010) Hahnke et al. 2017

  • synonyms

    • @ref: 20215
    • synonym: Vitellibacter aestuarii

@ref: 29701

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Aequorivita

species: Aequorivita aestuarii

strain designation: JC2436

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell shapemotility
29701negative8 µmrod-shapedno
67771negative

pigmentation

  • @ref: 29701
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
29701positivegrowth10-41
29701positiveoptimum30-35mesophilic
67770positivegrowth30mesophilic
67771positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29701aerobe
67771aerobe

spore formation

  • @ref: 29701
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
29701NaClpositivegrowth02-06 %
29701NaClpositiveoptimum02-03 %

observation

@refobservation
29701aggregates in chains
67770quinones: MK-6
67771quinones: MK-6

enzymes

@refvalueactivityec
29701alkaline phosphatase+3.1.3.1
29701cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
29701tidal flat sediment
67770Tidal-flat sediment of Oi IslandRepublic of KoreaKORAsia
67771From tidal flat sedimentRepublic of KoreaKORAsiaOi-island

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Tidal flat
#Environmental#Terrestrial#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_102516.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_74;96_41449;97_52931;98_69925;99_102516&stattab=map
  • Last taxonomy: Aequorivita aestuarii subclade
  • 16S sequence: EU642844
  • Sequence Identity:
  • Total samples: 195
  • soil counts: 20
  • aquatic counts: 112
  • animal counts: 63

Sequence information

16S sequences

  • @ref: 29701
  • description: Vitellibacter aestuarii strain JC2436 16S ribosomal RNA gene, partial sequence
  • accession: EU642844
  • length: 1448
  • database: nuccore
  • NCBI tax ID: 524290

GC content

@refGC-contentmethod
6777048.7high performance liquid chromatography (HPLC)
6777148.7

External links

@ref: 29701

culture collection no.: IMSNU 14137, KACC 13727, KCTC 22361, JCM 15496

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19801392Vitellibacter aestuarii sp. nov., isolated from tidal-flat sediment, and an emended description of the genus Vitellibacter.Kim BS, Kim OS, Moon EY, Chun JInt J Syst Evol Microbiol10.1099/ijs.0.019034-02009DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Flavobacteriaceae/*classification/genetics/*isolation & purification/metabolism, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiologyMetabolism
Phylogeny25795444Aureisphaera galaxeae gen. nov., sp. nov., a marine member of the family Flavobacteriaceae isolated from the hard coral Galaxea fascicularis.Yoon J, Yasumoto-Hirose M, Kasai HAntonie Van Leeuwenhoek10.1007/s10482-015-0432-42015Aerobiosis, Animals, Anthozoa/*microbiology, Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification/physiology, Japan, Microscopy, Electron, Transmission, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Pigments, Biological/analysis, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analysisGenetics
Phylogeny25870254Vitellibacter echinoideorum sp. nov., isolated from a sea urchin (Tripneustes gratilla).Lin SY, Hameed A, Wen CZ, Liu YC, Hsu YH, Shen FT, Lai WA, Young CCInt J Syst Evol Microbiol10.1099/ijs.0.0002582015Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sea Urchins/*microbiology, Seafood/*microbiology, Sequence Analysis, DNA, Taiwan, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
29701Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172608428776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/