Strain identifier
BacDive ID: 133569
Type strain: 
Species: Persicobacter psychrovividus
Strain Designation: Asr22-19
NCBI tax ID(s): 387638 (species)
version 8.1 (current version)
General
@ref: 29572
BacDive-ID: 133569
keywords: 16S sequence, Bacteria, facultative anaerobe, Gram-negative, motile, rod-shaped
description: Persicobacter psychrovividus Asr22-19 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from gut of Japanese shellfish.
NCBI tax id
- NCBI tax id: 387638
- Matching level: species
doi: 10.13145/bacdive133569.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Cytophagia
- order: Cytophagales
- family: Persicobacteraceae
- genus: Persicobacter
- species: Persicobacter psychrovividus
- full scientific name: Persicobacter psychrovividus Muramatsu et al. 2010
@ref: 29572
domain: Bacteria
phylum: Bacteroidetes
class: Cytophagia
order: Cytophagales
family: Persicobacteraceae
genus: Persicobacter
species: Persicobacter psychrovividus
strain designation: Asr22-19
type strain: yes
Morphology
cell morphology
- @ref: 29572
- gram stain: negative
- cell length: 0.9-6 µm
- cell width: 0.4-0.6 µm
- cell shape: rod-shaped
- motility: yes
- flagellum arrangement: gliding
pigmentation
- @ref: 29572
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 29572 | positive | growth | 05-45 | |
| 29572 | positive | optimum | 25 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 29572 | positive | growth | 03-11 | alkaliphile |
| 29572 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 29572
- oxygen tolerance: facultative anaerobe
spore formation
- @ref: 29572
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 29572 | NaCl | positive | growth | 01-07 % |
| 29572 | NaCl | positive | optimum | 5 % |
observation
- @ref: 29572
- observation: aggregates in chains
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29572 | 22653 | asparagine | + | carbon source |
| 29572 | 35391 | aspartate | + | carbon source |
| 29572 | 17057 | cellobiose | + | carbon source |
| 29572 | 23652 | dextrin | + | carbon source |
| 29572 | 28260 | galactose | + | carbon source |
| 29572 | 17234 | glucose | + | carbon source |
| 29572 | 29987 | glutamate | + | carbon source |
| 29572 | 28087 | glycogen | + | carbon source |
| 29572 | 17716 | lactose | + | carbon source |
| 29572 | 17306 | maltose | + | carbon source |
| 29572 | 37684 | mannose | + | carbon source |
| 29572 | 26986 | threonine | + | carbon source |
| 29572 | 27082 | trehalose | + | carbon source |
| 29572 | 4853 | esculin | + | hydrolysis |
| 29572 | 17632 | nitrate | + | reduction |
enzymes
- @ref: 29572
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
- @ref: 29572
- sample type: gut of Japanese shellfish
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Invertebrates (Other) | #Mollusca |
| #Host Body-Site | #Gastrointestinal tract | #Stomach |
taxonmaps
- @ref: 69479
- File name: preview.99_47326.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_440;96_2037;97_2455;98_3037;99_47326&stattab=map
- Last taxonomy: Persicobacter psychrovividus
- 16S sequence: AB260934
- Sequence Identity:
- Total samples: 1958
- soil counts: 41
- aquatic counts: 1648
- animal counts: 260
- plant counts: 9
Sequence information
16S sequences
- @ref: 29572
- description: Persicobacter psychrovividus gene for 16S ribosomal RNA, partial sequence, strain: NBRC 101262
- accession: AB260934
- length: 1447
- database: nuccore
- NCBI tax ID: 387638
GC content
- @ref: 29572
- GC-content: 42-42.7
External links
@ref: 29572
culture collection no.: NBRC 101262, CIP 109100
literature
- topic: Phylogeny
- Pubmed-ID: 19734280
- title: Persicobacter psychrovividus sp. nov., isolated from shellfish, and emended descriptions of the genus Persicobacter and Persicobacter diffluens.
- authors: Muramatsu Y, Takahashi M, Kaneyasu M, Iino T, Suzuki KI, Nakagawa Y
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.016113-0
- year: 2009
- mesh: Animals, Bacteroidetes/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Gastropoda/*microbiology, Molecular Sequence Data, Phylogeny, Polyplacophora/*microbiology, RNA, Ribosomal, 16S/genetics, Shellfish/*microbiology
- topic2: Metabolism
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 29572 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 25966 | 28776041 |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |