Persicobacter psychrovividus (NBRC 101262, CIP 109100, Asr22-19)

Name: Persicobacter psychrovividus (NBRC 101262, CIP 109100, Asr22-19)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133569

Type strain

Strain Designation Asr22-19

Culture col. no. NBRC 101262 CIP 109100 Asr22-19

NCBI tax ID(s) 387638

Special Collections CIP Literature strains

Links

Persicobacter psychrovividus Asr22-19 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from gut of Japanese shellfish.

Gram-negative motile rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 132756

NBRC 101262

@ref 20215

Last LPSN update 2026-02-09 11:31:58

Domain Bacteria

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Persicobacteraceae

Genus Persicobacter

Species Persicobacter psychrovividus

Full scientific name Persicobacter psychrovividus Muramatsu et al. 2010

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement
29572	negative	0.9-6 µm	0.4-0.6 µm	rod-shaped		gliding

Pigmentation

29572

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
29572	positive	growth	05-45
29572	positive	optimum	25

Culture pH

@ref	Ability	Type	PH	PH range
29572	positive	optimum	7
29572	positive	growth	03-11	alkaliphile

Physiology and metabolism

Oxygen tolerance

29572

Oxygen tolerancefacultative anaerobe

Spore formation

29572

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29572	NaCl	positive	growth	01-07 %
29572	NaCl	positive	optimum	5 %

Observation

29572

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29572	22653 ChEBI	asparagine	+	carbon source
29572	35391 ChEBI	aspartate	+	carbon source
29572	17057 ChEBI	cellobiose	+	carbon source
29572	23652 ChEBI	dextrin	+	carbon source
29572	4853 ChEBI	esculin	+	hydrolysis
29572	28260 ChEBI	galactose	+	carbon source
29572	17234 ChEBI	glucose	+	carbon source
29572	29987 ChEBI	glutamate	+	carbon source
29572	28087 ChEBI	glycogen	+	carbon source
29572	17716 ChEBI	lactose	+	carbon source
29572	17306 ChEBI	maltose	+	carbon source
29572	37684 ChEBI	mannose	+	carbon source
29572	17632 ChEBI	nitrate	+	reduction
29572	26986 ChEBI	threonine	+	carbon source
29572	27082 ChEBI	trehalose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29572	catalase	+	1.11.1.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Invertebrates (Other)	#Mollusca
#Host Body-Site	#Gastrointestinal tract	#Stomach

Isolation

29572

Sample typegut of Japanese shellfish

Taxonmaps

69479

Global distribution of 16S sequence AB260934 (>99% sequence identity) for Persicobacter psychrovividus from Microbeatlas

Aquatic Samples	1648
Soil Samples	41
Animal Samples	260
Plant Samples	9
Total Samples	1958

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
124043	ASM3649242v1 assembly for Persicobacter psychrovividus NBRC 101262	complete	GCA_036492425	387638.3	387638	93.86

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
29572	Persicobacter psychrovividus gene for 16S ribosomal RNA, partial sequence, strain: NBRC 101262	AB260934	1447		387638

GC content

29572

GC-content (mol%)42-42.7

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Persicobacter psychrovividus sp. nov., isolated from shellfish, and emended descriptions of the genus Persicobacter and Persicobacter diffluens.	Muramatsu Y, Takahashi M, Kaneyasu M, Iino T, Suzuki KI, Nakagawa Y	Int J Syst Evol Microbiol	10.1099/ijs.0.016113-0	2009

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25966	IJSEM 1735 2010 ( DOI 10.1099/ijs.0.016113-0 , PubMed 19734280 )
#29572	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25966
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Persicobacter psychrovividus (NBRC 101262, CIP 109100, Asr22-19)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_036492425

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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