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Strain identifier

BacDive ID: 133562

Type strain: Yes

Species: Paraburkholderia heleia

Strain Designation: SA41

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 29532

BacDive-ID: 133562

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Paraburkholderia heleia SA41 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from plant associated.

NCBI tax id

NCBI tax idMatching level
634127species
1218080strain

doi: 10.13145/bacdive133562.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Paraburkholderia
  • species: Paraburkholderia heleia
  • full scientific name: Paraburkholderia heleia (Aizawa et al. 2010) Sawana et al. 2015
  • synonyms

    • @ref: 20215
    • synonym: Burkholderia heleia

@ref: 29532

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Paraburkholderia

species: Paraburkholderia heleia

strain designation: SA41

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
29532negative1.6 µm0.65 µmrod-shapedno
69480negative99.031

pigmentation

  • @ref: 29532
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
29532positivegrowth17-42
29532positiveoptimum32mesophilic

culture pH

@refabilitytypepHPH range
29532positivegrowth3.5-9alkaliphile
29532positiveoptimum5

Physiology and metabolism

oxygen tolerance

  • @ref: 29532
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
29532no
69480no98.403

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 97.684

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2953223652dextrin+carbon source
2953228087glycogen+carbon source
2953217148putrescine+carbon source
2953226490quinate+carbon source
2953226546rhamnose+carbon source

enzymes

  • @ref: 29532
  • value: urease
  • activity: +
  • ec: 3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 29532
  • sample type: plant associated

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants

taxonmaps

  • @ref: 69479
  • File name: preview.99_6357.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_624;97_1919;98_4700;99_6357&stattab=map
  • Last taxonomy: Paraburkholderia heleia
  • 16S sequence: AB495123
  • Sequence Identity:
  • Total samples: 616
  • soil counts: 52
  • aquatic counts: 6
  • animal counts: 555
  • plant counts: 3

Sequence information

16S sequences

  • @ref: 29532
  • description: Burkholderia heleia gene for 16S rRNA, partial sequence, strain: SA41
  • accession: AB495123
  • length: 1393
  • database: nuccore
  • NCBI tax ID: 634127

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paraburkholderia heleia NBRC 101817 NBRC 101817GCA_000739775contigncbi1218080
66792Burkholderia heleia NBRC 1018171218080.3wgspatric1218080
66792Paraburkholderia heleia NBRC 1018172600255069draftimg1218080
66792Candidatus Marinimicrobia bacterium T3L19GCA_004124385contigpatric2026760

GC content

  • @ref: 29532
  • GC-content: 64

External links

@ref: 29532

culture collection no.: NBRC 101817

straininfo link

  • @ref: 20218
  • passport: http://www.straininfo.net/strains/853463

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19666801Burkholderia heleia sp. nov., a nitrogen-fixing bacterium isolated from an aquatic plant, Eleocharis dulcis, that grows in highly acidic swamps in actual acid sulfate soil areas of Vietnam.Aizawa T, Ve NB, Nakajima M, Sunairi MInt J Syst Evol Microbiol10.1099/ijs.0.015198-02009Bacterial Typing Techniques, Base Composition, Burkholderia/*classification/genetics/isolation & purification/physiology, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Eleocharis/growth & development/*microbiology, Fatty Acids/analysis, Genes, rRNA, Genotype, Hydrogen-Ion Concentration, Molecular Sequence Data, Nitrogen Fixation, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil/*analysis, Species Specificity, *Sulfates, Vietnam, *WetlandsGenetics
Phylogeny29676723Paraburkholderia caseinilytica sp. nov., isolated from the pine and broad-leaf mixed forest soil.Gao ZH, Zhong SF, Lu ZE, Xiao SY, Qiu LHInt J Syst Evol Microbiol10.1099/ijsem.0.0027742018Bacterial Typing Techniques, Base Composition, Burkholderiaceae/*classification/genetics/isolation & purification, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistryTranscriptome

Reference

@idauthorstitledoi/urljournalpubmedID_cross_reference
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
2592910.1099/ijs.0.015198-019666801
29532Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172877604125929
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes