Strain identifier
BacDive ID: 133562
Type strain: 
Species: Paraburkholderia heleia
Strain Designation: SA41
NCBI tax ID(s): 1218080 (strain), 634127 (species)
version 8.1 (current version)
General
@ref: 29532
BacDive-ID: 133562
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Paraburkholderia heleia SA41 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from plant associated.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1218080 | strain |
| 634127 | species |
doi: 10.13145/bacdive133562.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Burkholderiaceae
- genus: Paraburkholderia
- species: Paraburkholderia heleia
- full scientific name: Paraburkholderia heleia (Aizawa et al. 2010) Sawana et al. 2015
synonyms
- @ref: 20215
- synonym: Burkholderia heleia
@ref: 29532
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Burkholderiaceae
genus: Paraburkholderia
species: Paraburkholderia heleia
strain designation: SA41
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 29532 | negative | 1.6 µm | 0.65 µm | rod-shaped | no | |
| 69480 | negative | 99.996 |
pigmentation
- @ref: 29532
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 29532 | positive | growth | 17-42 | |
| 29532 | positive | optimum | 32 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 29532 | positive | growth | 3.5-9 | alkaliphile |
| 29532 | positive | optimum | 5 |
Physiology and metabolism
oxygen tolerance
- @ref: 29532
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 29532 | no | |
| 69481 | no | 100 |
| 69480 | no | 99.999 |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29532 | 23652 | dextrin | + | carbon source |
| 29532 | 28087 | glycogen | + | carbon source |
| 29532 | 17148 | putrescine | + | carbon source |
| 29532 | 26490 | quinate | + | carbon source |
| 29532 | 26546 | rhamnose | + | carbon source |
enzymes
- @ref: 29532
- value: urease
- activity: +
- ec: 3.5.1.5
Isolation, sampling and environmental information
isolation
- @ref: 29532
- sample type: plant associated
isolation source categories
- Cat1: #Host
- Cat2: #Plants
taxonmaps
- @ref: 69479
- File name: preview.99_6357.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_624;97_1919;98_4700;99_6357&stattab=map
- Last taxonomy: Paraburkholderia heleia
- 16S sequence: AB495123
- Sequence Identity:
- Total samples: 616
- soil counts: 52
- aquatic counts: 6
- animal counts: 555
- plant counts: 3
Sequence information
16S sequences
- @ref: 29532
- description: Burkholderia heleia gene for 16S rRNA, partial sequence, strain: SA41
- accession: AB495123
- length: 1393
- database: nuccore
- NCBI tax ID: 634127
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Paraburkholderia heleia NBRC 101817 | GCA_000739775 | contig | ncbi | 1218080 |
| 66792 | Burkholderia heleia NBRC 101817 | 1218080.3 | wgs | patric | 1218080 |
| 66792 | Paraburkholderia heleia NBRC 101817 | 2600255069 | draft | img | 1218080 |
GC content
- @ref: 29532
- GC-content: 64
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 85.137 | no |
| gram-positive | no | 98.146 | yes |
| anaerobic | no | 98.603 | yes |
| aerobic | yes | 90.875 | yes |
| halophile | no | 93.447 | no |
| spore-forming | no | 94.375 | yes |
| glucose-util | yes | 90.753 | no |
| flagellated | no | 87.589 | yes |
| glucose-ferment | no | 90.043 | no |
| thermophile | no | 99.388 | yes |
External links
@ref: 29532
culture collection no.: NBRC 101817
straininfo link
- @ref: 91506
- straininfo: 369187
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19666801 | Burkholderia heleia sp. nov., a nitrogen-fixing bacterium isolated from an aquatic plant, Eleocharis dulcis, that grows in highly acidic swamps in actual acid sulfate soil areas of Vietnam. | Aizawa T, Ve NB, Nakajima M, Sunairi M | Int J Syst Evol Microbiol | 10.1099/ijs.0.015198-0 | 2009 | Bacterial Typing Techniques, Base Composition, Burkholderia/*classification/genetics/isolation & purification/physiology, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Eleocharis/growth & development/*microbiology, Fatty Acids/analysis, Genes, rRNA, Genotype, Hydrogen-Ion Concentration, Molecular Sequence Data, Nitrogen Fixation, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil/*analysis, Species Specificity, *Sulfates, Vietnam, *Wetlands | Genetics |
| Phylogeny | 29676723 | Paraburkholderia caseinilytica sp. nov., isolated from the pine and broad-leaf mixed forest soil. | Gao ZH, Zhong SF, Lu ZE, Xiao SY, Qiu LH | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002774 | 2018 | Bacterial Typing Techniques, Base Composition, Burkholderiaceae/*classification/genetics/isolation & purification, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 29532 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 25929 | 28776041 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | ||
| 91506 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID369187.1 |