Name: Paraburkholderia heleia SA41
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133562

Type strain:

Species: Paraburkholderia heleia

Strain Designation: SA41

Culture col. no.: NBRC 101817

NCBI tax ID(s): 1218080 (strain), 634127 (species)

SI-ID 369187

NBRC 101817

Section

Paraburkholderia heleia SA41 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from plant associated.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Paraburkholderia*
	Species	**Paraburkholderia heleia**
	Full Scientific Name (LPSN)	Paraburkholderia heleia (Aizawa et al. 2010) Sawana et al. 2015

Synonym

Burkholderia heleia

Information on morphological and physiological properties Morphology

[Ref.: #29532]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.996

[Ref.: #29532]	Cell length	1.6 µm

[Ref.: #29532]	Cell width	0.65 µm

[Ref.: #29532]	Cell shape	rod-shaped

[Ref.: #29532]	Motility	no

[Ref.: #29532]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #29532]			growth	17-42 °C
[Ref.: #29532]			optimum	32 °C

[Ref.: #29532]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #29532]			optimum	5
[Ref.: #29532]			growth	3.5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29532]

Oxygen tolerance

aerobe

[Ref.: #29532]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29532]	dextrin ChEBI	+	carbon source
[Ref.: #29532]	glycogen ChEBI	+	carbon source
[Ref.: #29532]	putrescine ChEBI	+	carbon source
[Ref.: #29532]	quinate ChEBI	+	carbon source
[Ref.: #29532]	rhamnose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29532]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29532]	Sample type/isolated from	plant associated
* marker position based on {}

Isolation sources categories

#Host

#Plants

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB495123 (>99% sequence identity) for Paraburkholderia heleia from Microbeatlas

Aquatic Samples	6
Soil Samples	52
Animal Samples	555
Plant Samples	3
Total Samples	616

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29532]	Burkholderia heleia gene for 16S rRNA, partial sequence, strain: SA41	AB495123	1393	GenBank	634127 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paraburkholderia heleia NBRC 101817	GCA_000739775	contig	GenBank	1218080 tax ID	*
[Ref.: #66792]	Burkholderia heleia NBRC 101817	1218080.3	wgs	PATRIC	1218080 tax ID	*
[Ref.: #66792]	Paraburkholderia heleia NBRC 101817	2600255069	draft	JGI IMG/M	1218080 tax ID	*

[Ref.: #29532]

GC-content

64 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Burkholderia heleia NBRC 101817 PATRIC: 1218080.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Burkholderia heleia NBRC 101817 PATRIC: 1218080.3
[Ref.: #69480]	motile	yes	85.137	no
[Ref.: #69480]	gram-positive	no	98.146	yes
[Ref.: #69480]	anaerobic	no	98.603	yes
[Ref.: #69480]	aerobic	yes	90.875	yes
[Ref.: #69480]	halophile	no	93.447	no
[Ref.: #69480]	spore-forming	no	94.375	yes
[Ref.: #69480]	glucose-util	yes	90.753	no
[Ref.: #69480]	flagellated	no	87.589	yes
[Ref.: #69480]	glucose-ferment	no	90.043	no
[Ref.: #69480]	thermophile	no	99.388	yes

Availability in culture collections External links

[Ref.: #29532]

Culture collection no.

NBRC 101817

[Ref.: #91506]

SI-ID 369187

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paraburkholderia caseinilytica sp. nov., isolated from the pine and broad-leaf mixed forest soil.	Gao ZH, Zhong SF, Lu ZE, Xiao SY, Qiu LH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002774	2018	*
Phylogeny	Burkholderia heleia sp. nov., a nitrogen-fixing bacterium isolated from an aquatic plant, Eleocharis dulcis, that grows in highly acidic swamps in actual acid sulfate soil areas of Vietnam.	Aizawa T, Ve NB, Nakajima M, Sunairi M	Int J Syst Evol Microbiol	10.1099/ijs.0.015198-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29532

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25929 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91506

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID369187.1 )

#25929

IJSEM 1152 2010 ( DOI 10.1099/ijs.0.015198-0 , PubMed 19666801 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Paraburkholderia heleia in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Burkholderia heleia NBRC 101817

Burkholderia heleia NBRC 101817

Change proposal

Change proposal