Paraburkholderia heleia (NBRC 101817, SA41)

Name: Paraburkholderia heleia (NBRC 101817, SA41)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133562

Type strain

Strain Designation SA41

Culture col. no. NBRC 101817 SA41

NCBI tax ID(s) 1218080 634127

Special Collections Literature strains

Links

Paraburkholderia heleia SA41 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from plant associated.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 369187

LMG 29541,NBRC 101817

@ref 20215

Last LPSN update 2026-02-09 11:31:58

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Paraburkholderia

Species Paraburkholderia heleia

Full scientific name Paraburkholderia heleia (Aizawa et al. 2010) Sawana et al. 2015

Synonyms (1)

Burkholderia heleia

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29532	negative	1.6 µm	0.65 µm	rod-shaped
125438	negative				97
125439	negative				98.9

Pigmentation

29532

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
29532	positive	growth	17-42
29532	positive	optimum	32

Culture pH

@ref	Ability	Type	PH	PH range
29532	positive	optimum	5
29532	positive	growth	3.5-9	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29532	aerobe
125438	aerobe	92.338
125439	obligate aerobe	98.4

Spore formation

@ref	Spore formation	Confidence
29532
125439		98.3

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29532	23652 ChEBI	dextrin	+	carbon source
29532	28087 ChEBI	glycogen	+	carbon source
29532	17148 ChEBI	putrescine	+	carbon source
29532	26490 ChEBI	quinate	+	carbon source
29532	26546 ChEBI	rhamnose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29532	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Plants

Isolation

29532

Sample typeplant associated

Taxonmaps

69479

Global distribution of 16S sequence AB495123 (>99% sequence identity) for Paraburkholderia heleia from Microbeatlas

Aquatic Samples	6
Soil Samples	52
Animal Samples	555
Plant Samples	3
Total Samples	616

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM73977v1 assembly for Paraburkholderia heleia NBRC 101817	contig	GCA_000739775	1218080.3	2600255069	1218080	57.71

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
29532	Burkholderia heleia gene for 16S rRNA, partial sequence, strain: SA41	AB495123	1393		634127
124043	Burkholderia heleia gene for 16S ribosomal RNA, partial sequence, strain: NBRC 101817.	AB537486	1456		1218080

GC content

29532

GC-content (mol%)64

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paraburkholderia heleia NBRC 101817
NCBI: GCA_000739775

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.30	no
125439	motility	BacteriaNetⓘ	yes	73.50	no
125439	gram_stain	BacteriaNetⓘ	negative	98.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Burkholderia heleia NBRC 101817
PATRIC: 1218080.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.00	yes
125438	anaerobic	anaerobicⓘ	no	95.63	no
125438	spore-forming	spore-formingⓘ	no	85.21	no
125438	aerobic	aerobicⓘ	yes	92.34	yes
125438	thermophilic	thermophileⓘ	no	97.50	yes
125438	flagellated	motile2+ⓘ	yes	84.89	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Evaluation of an Epitypified Ophiocordyceps formosana (Cordyceps s.l.) for Its Pharmacological Potential.	Wang YW, Hong TW, Tai YL, Wang YJ, Tsai SH, Lien PT, Chou TH, Lai JY, Chu R, Ding ST, Irie K, Li TK, Tzean SS, Shen TL.	Evid Based Complement Alternat Med	10.1155/2015/189891	2015
	Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species.	Sawana A, Adeolu M, Gupta RS.	Front Genet	10.3389/fgene.2014.00429	2014
Enzymology	Burkholderia humi sp. nov., isolated from peat soil.	Srinivasan S, Kim J, Kang SR, Jheong WH, Lee SS.	Curr Microbiol	10.1007/s00284-012-0270-9	2013
Phylogeny	Paraburkholderia caseinilytica sp. nov., isolated from the pine and broad-leaf mixed forest soil.	Gao ZH, Zhong SF, Lu ZE, Xiao SY, Qiu LH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002774	2018
Phylogeny	Burkholderia heleia sp. nov., a nitrogen-fixing bacterium isolated from an aquatic plant, Eleocharis dulcis, that grows in highly acidic swamps in actual acid sulfate soil areas of Vietnam.	Aizawa T, Ve NB, Nakajima M, Sunairi M	Int J Syst Evol Microbiol	10.1099/ijs.0.015198-0	2009

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25929	IJSEM 1152 2010 ( DOI 10.1099/ijs.0.015198-0 , PubMed 19666801 )
#29532	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25929
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Paraburkholderia heleia (NBRC 101817, SA41)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000739775

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media