Strain identifier

BacDive ID: 133494

Type strain: Yes

Species: Chryseobacterium anthropi

Strain Designation: NF 1366

Strain history: CIP <- 2007, G. Wauters, Leuven Univ., Brussels, Belgium: strain NF 1366

NCBI tax ID(s): 520603 (species)

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General

@ref: 29189

BacDive-ID: 133494

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Chryseobacterium anthropi NF 1366 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Human blood,78-yr-old man,Candida endocarditis.

NCBI tax id

  • NCBI tax id: 520603
  • Matching level: species

strain history

@refhistory
347072007, G. Wanters, Louvain Univ., Brussels, Belgium, strain: NF 1366
116411CIP <- 2007, G. Wauters, Leuven Univ., Brussels, Belgium: strain NF 1366

doi: 10.13145/bacdive133494.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium anthropi
  • full scientific name: Chryseobacterium anthropi Kämpfer et al. 2009

  • synonyms

    • @ref: 20215
    • synonym: Kaistella anthropi

@ref: 29189

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Chryseobacterium

species: Chryseobacterium anthropi

strain designation: NF 1366

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
29189negative3 µm0.75 µmrod-shapedno
69480negative99.997
116411negativerod-shapedno

pigmentation

  • @ref: 29189
  • production: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
34707MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116411CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
29189positivegrowth20-37
29189positiveoptimum30mesophilic
34707positivegrowth30mesophilic
59664positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29189aerobe
59664aerobe
116411obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.993

halophily

  • @ref: 29189
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <3 %

observation

  • @ref: 29189
  • observation: aggregates in clumps

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2918930089acetate+carbon source
2918917234glucose+carbon source
2918917306maltose+carbon source
2918937684mannose+carbon source
2918953426tween 80+carbon source
11641117632nitrate-reduction
11641116301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
2918935581indoleyes
11641135581indoleyes

metabolite tests

  • @ref: 29189
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
29189alkaline phosphatase+3.1.3.1
29189catalase+1.11.1.6
29189gelatinase+
29189cytochrome oxidase+1.9.3.1
116411oxidase+
116411catalase+1.11.1.6
116411urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116411-+++-+++++++---+----

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinentisolation date
59664Human blood,78-yr-old man,Candida endocarditis2006-02-16BrusselsBelgiumBELEurope
116411Blood cultureBrusselsBelgiumBELEurope2006

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Fluids#Blood
#Host Body-Site#Organ#Heart
#Host#Human#Male
#Host#Fungi

taxonmaps

  • @ref: 69479
  • File name: preview.99_17752.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_76;96_497;97_569;98_654;99_17752&stattab=map
  • Last taxonomy: Weeksellaceae
  • 16S sequence: AM982786
  • Sequence Identity:
  • Total samples: 953
  • soil counts: 137
  • aquatic counts: 207
  • animal counts: 578
  • plant counts: 31

Safety information

risk assessment

  • @ref: 116411
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 29189
  • description: Chryseobacterium anthropi partial 16S rRNA gene, type strain NF 1366T
  • accession: AM982786
  • length: 1456
  • database: nuccore
  • NCBI tax ID: 520603

Genome sequences

  • @ref: 66792
  • description: Kaistella anthropi CCUG 52764
  • accession: GCA_020480345
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 520603

GC content

  • @ref: 29189
  • GC-content: 39

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno96.459yes
gram-positiveno98.034yes
anaerobicno99.046no
aerobicyes88.821yes
halophileno90.523no
spore-formingno97.382no
motileno91.117yes
thermophileno99.292yes
glucose-utilyes87.013yes
glucose-fermentno91.189no

External links

@ref: 29189

culture collection no.: CCUG 52764, CIP 109762

straininfo link

  • @ref: 91468
  • straininfo: 364121

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19622666Description of Chryseobacterium anthropi sp. nov. to accommodate clinical isolates biochemically similar to Kaistella koreensis and Chryseobacterium haifense, proposal to reclassify Kaistella koreensis as Chryseobacterium koreense comb. nov. and emended description of the genus Chryseobacterium.Kampfer P, Vaneechoutte M, Lodders N, De Baere T, Avesani V, Janssens M, Busse HJ, Wauters GInt J Syst Evol Microbiol10.1099/ijs.0.008250-02009Bacterial Typing Techniques, Chryseobacterium/classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Flavobacteriaceae/*classification/genetics/isolation & purification, Flavobacteriaceae Infections/*microbiology, Humans, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/geneticsEnzymology
Phylogeny27412503Chryseobacterium montanum sp. nov. isolated from mountain soil.Guo W, Li J, Shi M, Yuan K, Li N, Wang GInt J Syst Evol Microbiol10.1099/ijsem.0.0013092016Bacterial Typing Techniques, Base Composition, China, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny35639593Chryseobacterium faecale sp. nov., isolated from camel feces.Son Y, Min J, Park WInt J Syst Evol Microbiol10.1099/ijsem.0.0054052022Animals, Bacterial Typing Techniques, Base Composition, Camelus, *Chryseobacterium, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
29189Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172561328776041
34707Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7541
59664Curators of the CCUGhttps://www.ccug.se/strain?id=52764Culture Collection University of Gothenburg (CCUG) (CCUG 52764)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
91468Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID364121.1
116411Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109762Collection of Institut Pasteur (CIP 109762)