Strain identifier

BacDive ID: 133460

Type strain: Yes

Species: Mucilaginibacter ximonensis

Strain Designation: XM-003

Strain history: <- X Luo, CCTCC, China

NCBI tax ID(s): 538021 (species)

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General

@ref: 29067

BacDive-ID: 133460

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Mucilaginibacter ximonensis XM-003 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 538021
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- X Luo, CCTCC, China

doi: 10.13145/bacdive133460.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Sphingobacteriia
  • order: Sphingobacteriales
  • family: Sphingobacteriaceae
  • genus: Mucilaginibacter
  • species: Mucilaginibacter ximonensis
  • full scientific name: Mucilaginibacter ximonensis Luo et al. 2009

@ref: 29067

domain: Bacteria

phylum: Bacteroidetes

class: Sphingobacteriia

order: Sphingobacteriales

family: Sphingobacteriaceae

genus: Mucilaginibacter

species: Mucilaginibacter ximonensis

strain designation: XM-003

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
29067negative1.45 µm0.4 µmrod-shapedno
67771rod-shapedno
67771negative

pigmentation

  • @ref: 29067
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
29067positivegrowth10-33
29067positiveoptimum28mesophilic
67771positivegrowth28mesophilic

culture pH

@refabilitytypepH
29067positivegrowth5.0-8.0
29067positiveoptimum6.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29067aerobe
67771aerobe

spore formation

@refspore formation
29067no
67771no

halophily

  • @ref: 29067
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <1 %

observation

  • @ref: 67771
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2906730089acetate+carbon source
2906737684mannose+carbon source
2906728053melibiose+carbon source
29067506227N-acetylglucosamine+carbon source
2906716634raffinose+carbon source
2906727082trehalose+carbon source
290674853esculin+hydrolysis

enzymes

@refvalueactivityec
29067catalase+1.11.1.6
29067cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
29067soil
67771From soilXimo village in TibetChinaCHNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Sequence information

16S sequences

  • @ref: 29067
  • description: Mucilaginibacter ximonensis strain XM-003 16S ribosomal RNA gene, partial sequence
  • accession: EU729366
  • length: 1431
  • database: nuccore
  • NCBI tax ID: 538021

GC content

@refGC-content
2906743.4
6777143.2

External links

@ref: 29067

culture collection no.: CCTCC AB 207094, KCTC 22437

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19502332Mucilaginibacter ximonensis sp. nov., isolated from Tibetan soil.Luo X, Zhang L, Dai J, Liu M, Zhang K, An H, Fang CInt J Syst Evol Microbiol10.1099/ijs.0.005405-02009Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification/physiology, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Molecular Sequence Data, Oryza, Phenotype, Phylogeny, Plant Roots, Polymerase Chain Reaction/methods, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity, TibetGenetics
Phylogeny23291898Mucilaginibacter herbaticus sp. nov., isolated from the rhizosphere of the medicinal plant Angelica sinensis.Lee HR, Han SI, Rhee KH, Whang KSInt J Syst Evol Microbiol10.1099/ijs.0.038398-02013Angelica sinensis/*microbiology, Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Plants, Medicinal/microbiology, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Sphingolipids/analysis, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny30306464Mucilaginibacter formosus sp. nov., a bacterium isolated from road-side soil.Huq MA, Akter S, Lee SYAntonie Van Leeuwenhoek10.1007/s10482-018-1183-92018Bacterial Typing Techniques, Bacteroidetes/classification/genetics/*isolation & purification/metabolism, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Soil/chemistry, *Soil MicrobiologyMetabolism
Phylogeny31741188Mucilaginibacter corticis sp. nov., isolated from bark of Pinus koraiensis.Akter S, Huq MAAntonie Van Leeuwenhoek10.1007/s10482-019-01358-52019Bacteroidetes/*genetics/*isolation & purification, Genome, Bacterial, Phylogeny, Pinus/*microbiology, Plant Bark/*microbiology, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species SpecificityGenetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
29067Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172549728776041
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc