Name: Mucilaginibacter ximonensis XM-003
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133460

Type strain:

Species: Mucilaginibacter ximonensis

Strain Designation: XM-003

Culture col. no.: CCTCC AB 207094, KCTC 22437

Strain history: <- X Luo, CCTCC, China

NCBI tax ID(s): 538021 (species)

Section

Mucilaginibacter ximonensis XM-003 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Mucilaginibacter*
	Species	**Mucilaginibacter ximonensis**
	Full Scientific Name (LPSN)	Mucilaginibacter ximonensis Luo et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29067]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #29067]	Cell length	1.45 µm

[Ref.: #29067]	Cell width	0.4 µm

[Ref.: #29067]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #29067]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #29067]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29067]	growth	10-33 °C
[Ref.: #29067]	optimum	28 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #29067]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29067]			optimum	6.5
[Ref.: #29067]			growth	5.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29067]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #29067]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29067]		NaCl		growth	<1	%

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29067]	acetate ChEBI	+	carbon source
[Ref.: #29067]	esculin ChEBI	+	hydrolysis
[Ref.: #29067]	mannose ChEBI	+	carbon source
[Ref.: #29067]	melibiose ChEBI	+	carbon source
[Ref.: #29067]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #29067]	raffinose ChEBI	+	carbon source
[Ref.: #29067]	trehalose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29067]		catalase	+	1.11.1.6
[Ref.: #29067]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29067]	Sample type/isolated from	soil

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Ximo village in Tibet
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29067]	Mucilaginibacter ximonensis strain XM-003 16S ribosomal RNA gene, partial sequence	EU729366	1431	GenBank	538021 tax ID

[Ref.: #29067]	GC-content	43.4 mol%
[Ref.: #67771]	GC-content	43.2 mol%

Availability in culture collections External links

[Ref.: #29067]

Culture collection no.

CCTCC AB 207094, KCTC 22437

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mucilaginibacter corticis sp. nov., isolated from bark of Pinus koraiensis.	Akter S, Huq MA	Antonie Van Leeuwenhoek	10.1007/s10482-019-01358-5	2019	*
Phylogeny	Mucilaginibacter formosus sp. nov., a bacterium isolated from road-side soil.	Huq MA, Akter S, Lee SY	Antonie Van Leeuwenhoek	10.1007/s10482-018-1183-9	2018	*
Phylogeny	Mucilaginibacter herbaticus sp. nov., isolated from the rhizosphere of the medicinal plant Angelica sinensis.	Lee HR, Han SI, Rhee KH, Whang KS	Int J Syst Evol Microbiol	10.1099/ijs.0.038398-0	2013	*
Phylogeny	Mucilaginibacter ximonensis sp. nov., isolated from Tibetan soil.	Luo X, Zhang L, Dai J, Liu M, Zhang K, An H, Fang C	Int J Syst Evol Microbiol	10.1099/ijs.0.005405-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29067

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25497 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#25497

IJSEM 1447 2009 ( DOI 10.1099/ijs.0.005405-0 , PubMed 19502332 )

* These data were automatically processed and therefore are not curated

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