Strain identifier
BacDive ID: 133428
Type strain: 
Species: Actinomadura miaoliensis
Strain Designation: BC44T-5
Strain history: BCRC 16873 <-- M. Tseng et al. BC 44T-5.
NCBI tax ID(s): 430685 (species)
version 8.1 (current version)
General
@ref: 28914
BacDive-ID: 133428
keywords: 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive
description: Actinomadura miaoliensis BC44T-5 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 430685
- Matching level: species
strain history
- @ref: 67770
- history: BCRC 16873 <-- M. Tseng et al. BC 44T-5.
doi: 10.13145/bacdive133428.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Thermomonosporaceae
- genus: Actinomadura
- species: Actinomadura miaoliensis
- full scientific name: Actinomadura miaoliensis Tseng et al. 2009
@ref: 28914
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Streptosporangiales
family: Thermomonosporaceae
genus: Actinomadura
species: Actinomadura miaoliensis
strain designation: BC44T-5
type strain: yes
Morphology
cell morphology
- @ref: 28914
- gram stain: positive
- motility: no
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 28914 | positive | growth | 25-55 | |
| 28914 | positive | optimum | 40 | thermophilic |
| 67770 | positive | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 28914
- oxygen tolerance: aerobe
spore formation
- @ref: 28914
- spore formation: yes
observation
- @ref: 67770
- observation: quinones: MK-9(H4), MK-9(H2)
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 28914 | 28757 | fructose | + | carbon source |
| 28914 | 17234 | glucose | + | carbon source |
| 28914 | 17716 | lactose | + | carbon source |
| 28914 | 26546 | rhamnose | + | carbon source |
| 28914 | 30911 | sorbitol | + | carbon source |
| 28914 | 27082 | trehalose | + | carbon source |
| 28914 | 18222 | xylose | + | carbon source |
| 28914 | 4853 | esculin | + | hydrolysis |
| 28914 | 17632 | nitrate | + | reduction |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 28914 | soil | ||||
| 67770 | Soil | Miaoli | Taiwan | TWN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_73062.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_2558;97_39343;98_51175;99_73062&stattab=map
- Last taxonomy: Actinomadura
- 16S sequence: EF116925
- Sequence Identity:
- Total samples: 244
- soil counts: 179
- aquatic counts: 18
- animal counts: 30
- plant counts: 17
Sequence information
16S sequences
- @ref: 28914
- description: Actinomadura miaoliensis strain BC 44T-5 16S ribosomal RNA gene, partial sequence
- accession: EF116925
- length: 1514
- database: nuccore
- NCBI tax ID: 430685
GC content
| @ref | GC-content | method |
|---|---|---|
| 28914 | 70.6 | |
| 67770 | 70.6 | high performance liquid chromatography (HPLC) |
External links
@ref: 28914
culture collection no.: FIRDI 002, BCRC 16873, LMG 24335, JCM 16702, NCIMB 14658
straininfo link
- @ref: 91433
- straininfo: 361147
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19244432 | Actinomadura miaoliensis sp. nov., a thermotolerant polyester-degrading actinomycete. | Tseng M, Yang SF, Hoang KC, Liao HC, Yuan GF, Liao CC | Int J Syst Evol Microbiol | 10.1099/ijs.0.001479-0 | 2009 | Actinomycetales/*classification/genetics/isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis/genetics, *Hot Temperature, Molecular Sequence Data, Phenotype, Polyesters/*metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity, Spores, Bacterial/physiology, Taiwan | Stress |
| Enzymology | 23418178 | Chemical constituents from a soil-derived actinomycete, Actinomadura miaoliensis BCRC 16873, and their inhibitory activities on lipopolysaccharide-induced tumor necrosis factor production. | Tseng M, Su YS, Cheng MJ, Liu TW, Chen IS, Wu MD, Chang HS, Yuan GF | Chem Biodivers | 10.1002/cbdv.201200242 | 2013 | 4-Butyrolactone/*analogs & derivatives/chemistry/isolation & purification/physiology, Actinomycetales/*chemistry, Cell Line, Humans, Lipopolysaccharides/*immunology, Pyrones/chemistry/isolation & purification/*pharmacology, Soil Microbiology, Tumor Necrosis Factor-alpha/*antagonists & inhibitors/immunology | Phylogeny |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 28914 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 25353 | 28776041 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
| 91433 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID361147.1 |