Strain identifier
BacDive ID: 133420
Type strain: 
Species: Rhizobium alamii
Strain Designation: GBV016
NCBI tax ID(s): 492774 (species)
version 8.1 (current version)
General
@ref: 28886
BacDive-ID: 133420
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Rhizobium alamii GBV016 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 492774
- Matching level: species
doi: 10.13145/bacdive133420.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Rhizobium
- species: Rhizobium alamii
- full scientific name: Rhizobium alamii Berge et al. 2009
@ref: 28886
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Rhizobiaceae
genus: Rhizobium
species: Rhizobium alamii
strain designation: GBV016
type strain: yes
Morphology
cell morphology
- @ref: 28886
- gram stain: negative
- cell length: 1 µm
- cell width: 0.7 µm
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture temp
- @ref: 28886
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 28886
- oxygen tolerance: aerobe
halophily
- @ref: 28886
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: <0.1 %
observation
- @ref: 28886
- observation: aggregates in clumps
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 28886 | 17126 | DL-carnitine | + | carbon source |
| 28886 | 15740 | formate | + | carbon source |
| 28886 | 33984 | fucose | + | carbon source |
| 28886 | 24148 | galactonate | + | carbon source |
| 28886 | 17234 | glucose | + | carbon source |
| 28886 | 17306 | maltose | + | carbon source |
| 28886 | 29864 | mannitol | + | carbon source |
| 28886 | 33942 | ribose | + | carbon source |
| 28886 | 17992 | sucrose | + | carbon source |
| 28886 | 18222 | xylose | + | carbon source |
enzymes
- @ref: 28886
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
- @ref: 28886
- sample type: soil
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_3787.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_62;97_2170;98_2887;99_3787&stattab=map
- Last taxonomy: Rhizobium
- 16S sequence: AM931436
- Sequence Identity:
- Total samples: 1890
- soil counts: 1145
- aquatic counts: 181
- animal counts: 198
- plant counts: 366
Sequence information
16S sequences
- @ref: 28886
- description: Rhizobium alamii partial 16S rRNA gene, type strain GBV016T
- accession: AM931436
- length: 1381
- database: nuccore
- NCBI tax ID: 492774
Genome sequences
- @ref: 66792
- description: Rhizobium alamii LMG 24466
- accession: 2739367696
- assembly level: draft
- database: img
- NCBI tax ID: 492774
External links
@ref: 28886
culture collection no.: CFBP 71465, LMG 24466
straininfo link
- @ref: 91427
- straininfo: 360717
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19196780 | Rhizobium alamii sp. nov., an exopolysaccharide-producing species isolated from legume and non-legume rhizospheres. | Berge O, Lodhi A, Brandelet G, Santaella C, Roncato MA, Christen R, Heulin T, Achouak W | Int J Syst Evol Microbiol | 10.1099/ijs.0.000521-0 | 2009 | Fabaceae/*microbiology, Molecular Sequence Data, Phylogeny, Plant Roots/microbiology, Polysaccharides, Bacterial/*metabolism, RNA, Ribosomal, 16S/genetics, Rhizobium/*classification/genetics/isolation & purification, Species Specificity | Genetics |
| Phylogeny | 28598309 | Reclassification of Arthrobacter viscosus as Rhizobium viscosum comb. nov. | Flores-Felix JD, Ramirez-Bahena MH, Salazar S, Peix A, Velazquez E | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001864 | 2017 | Arthrobacter/*classification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Genes, Bacterial, Guatemala, Nucleic Acid Hybridization, *Phylogeny, Rhizobium/*classification, Sequence Analysis, DNA, *Soil Microbiology | Transcriptome |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 28886 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 25326 | 28776041 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
| 91427 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID360717.1 |