Strain identifier

BacDive ID: 133375

Type strain: Yes

Species: Aliidiomarina soli

Strain Designation: Y4G10-17

NCBI tax ID(s): 1928574 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 8.1 (current version)

General

@ref: 25216

BacDive-ID: 133375

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Aliidiomarina soli Y4G10-17 is an obligate aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from saline–alkaline soil collected from a farmland in Ordos.

NCBI tax id

  • NCBI tax id: 1928574
  • Matching level: species

doi: 10.13145/bacdive133375.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Idiomarinaceae
  • genus: Aliidiomarina
  • species: Aliidiomarina soli
  • full scientific name: Aliidiomarina soli Xu et al. 2017

@ref: 25216

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Idiomarinaceae

genus: Aliidiomarina

species: Aliidiomarina soli

strain designation: Y4G10-17

type strain: yes

Morphology

cell morphology

  • @ref: 25216
  • gram stain: negative
  • cell length: 1.2-2.4 µm
  • cell width: 0.1-0.3 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: polar

colony morphology

  • @ref: 25216
  • colony size: 3-4 mm
  • colony color: yellow
  • colony shape: circular
  • incubation period: 2 days
  • medium used: LB agar

Culture and growth conditions

culture medium

  • @ref: 25216
  • name: LB (Luria-Bertani) MEDIUM
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
25216positivegrowth4-45
25216positiveoptimum30mesophilic

culture pH

@refabilitytypepHPH range
25216positivegrowth6.0-12.0alkaliphile
25216positiveoptimum9

Physiology and metabolism

oxygen tolerance

  • @ref: 25216
  • oxygen tolerance: obligate aerobe

spore formation

  • @ref: 25216
  • spore formation: no

halophily

@refsalttested relationconcentrationgrowth
25216NaCloptimum4.0-6.0 %
25216NaClgrowth1.0-12.0 %(w/v)positive

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2521630089acetate-assimilation
2521635391aspartate-assimilation
2521616947citrate-assimilation
2521617634D-glucose-assimilation
2521616024D-mannose-assimilation
2521665327D-xylose-assimilation
2521627689decanoate-assimilation
252164853esculin-hydrolysis
2521617234glucose-fermentation
2521630849L-arabinose-assimilation
2521629985L-glutamate-assimilation
2521615603L-leucine-assimilation
2521615589L-malate-assimilation
2521617716lactose-assimilation
2521615792malonate-assimilation
2521617306maltose-assimilation
2521617790methanol-assimilation
25216506227N-acetylglucosamine-assimilation
2521617632nitrate-reduction
2521618401phenylacetate-assimilation
2521632032potassium gluconate-assimilation
2521653258sodium citrate-assimilation
2521617128adipate+assimilation
2521628885butanol+assimilation
2521616919creatine+assimilation
2521615824D-fructose+assimilation
2521616236ethanol+assimilation
2521617268myo-inositol+assimilation
2521616467L-arginine+assimilation
2521617295L-phenylalanine+assimilation
2521617203L-proline+assimilation
2521662345L-rhamnose+assimilation
2521617115L-serine+assimilation
2521617306maltose+assimilation
2521629864mannitol+assimilation
2521617992sucrose+assimilation

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantresistance conc.is sensitivesensitivity conc.
2521628368novobiocinyesyes30 µg
252162676amoxicillinyesyes10 µg (disc)
2521628971ampicillinyesyes10 µg (disc)
2521628669bacitracinyesyes0.04 Unit
252163393carbenicillinyesyes100 µg (disc)
2521648923erythromycinyesyes15 µg (disc)
2521617833gentamicinyesyes10 µg (disc)
252166104kanamycinyesyes30 µg (disc)
252166472lincomycinyesyes2 µg (disc)
2521618208penicillin gyesyes10 Unit
2521659062polymyxinyesyes300 Unit (disc)
2521628077rifampicinyesyes5 µg (disc)
2521648844roxithromycinyesyes15 µg (disc)
2521617076streptomycinyesyes10 µg (disc)
2521627902tetracyclineyesyes30 µg (disc)
2521645924trimethoprimyesyes5 µg (disc)
2521628001vancomycinyesyes30 µg (disc)
252169215spectinomycinyesyes100 µg (disc)
252163547cephradineyesyes30 µg (disc)
2521617698chloramphenicolyesyes30 µg (disc)

metabolite production

  • @ref: 25216
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
25216acid phosphatase+3.1.3.2
25216alkaline phosphatase+3.1.3.1
25216alpha-chymotrypsin+3.4.21.1
25216alpha-fucosidase-3.2.1.51
25216alpha-galactosidase-3.2.1.22
25216alpha-glucosidase-3.2.1.20
25216alpha-mannosidase-3.2.1.24
25216arginine dihydrolase+3.5.3.6
25216beta-glucosidase-3.2.1.21
25216beta-glucuronidase-3.2.1.31
25216catalase+1.11.1.6
25216cystine arylamidase-3.4.11.3
25216cytochrome oxidase+1.9.3.1
25216esterase (C 4)+
25216esterase Lipase (C 8)+
25216gelatinase+
25216leucine arylamidase+3.4.11.1
25216lipase (C 14)+
25216N-acetyl-beta-glucosaminidase-3.2.1.52
25216naphthol-AS-BI-phosphohydrolase+
25216trypsin+3.4.21.4
25216urease+3.5.1.5
25216valine arylamidase+

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    25216C11:0 iso 3OH6.1
    25216C15:0 iso30.8
    25216C15:0 iso 2OH / C16:1ω7c5.7
    25216C15:1 iso F8.7
    25216C17:0 iso18.8
    25216C17:1 iso ω9c / C16:0 10-methyl13.9
  • type of FA analysis: whole cell analysis
  • incubation medium: Tryptic soy agar (TSA)
  • agar/liquid: agar
  • incubation temperature: 30
  • incubation time: 1
  • system: MIS MIDI
  • method/protocol: Sasser 1990

Isolation, sampling and environmental information

isolation

  • @ref: 25216
  • sample type: saline–alkaline soil collected from a farmland in Ordos
  • geographic location: Ordos, Inner Mongolia, northern China
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 40
  • longitude: 107

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture
#Environmental#Terrestrial#Soil
#Condition#Alkaline
#Condition#Saline

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
2521616S rRNA gene sequencesKX3551661351ena1928574
2521616S rRNA gene sequencesKX5480711513ena1928574
2521616S rRNA gene sequencesKX5480721512ena1928574
2521616S rRNA gene sequencesKX5480731513ena1928574
2521616S rRNA gene sequencesKX5480741151ena1928574
2521616S rRNA gene sequencesKX5480751512ena1928574
2521616S rRNA gene sequencesKX5480761513ena1928574
2521616S rRNA gene sequencesKX5480771512ena1928574

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aliidiomarina soli Y4G10-17GCA_003986975contigncbi1928574
66792Aliidiomarina soli Y4G10-172890070066draftimg1928574

GC content

  • @ref: 25216
  • GC-content: 49.3
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 25216

culture collection no.: CGMCC 1.15759, KCTC 52381

literature

  • topic: Phylogeny
  • Pubmed-ID: 27926823
  • title: Aliidiomarina soli sp. nov., isolated from saline-alkaline soil.
  • authors: Xu L, Sun JQ, Wang LJ, Liu XZ, Ji YY, Shao ZQ, Wu XL
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001709
  • year: 2017
  • mesh: Alkalies, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/genetics, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25216L. S. Xu, J. Q.,Wang, L. J.,Liu, X. Z.,Ji, Y. Y.,Shao, Z. Q.,Wu, X. L.Aliidiomarina soli sp. nov., isolated from saline-alkaline soil10.1099/ijsem.0.001709IJSEM 67: 724-728 201727926823
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880