Aliidiomarina soli (CGMCC 1.15759, KCTC 52381, Y4G10-17)

Name: Aliidiomarina soli (CGMCC 1.15759, KCTC 52381, Y4G10-17)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133375

Type strain

Strain Designation Y4G10-17

Culture col. no. CGMCC 1.15759 KCTC 52381 Y4G10-17

NCBI tax ID(s) 1928574

Special Collections KCTC Literature strains

Links

Aliidiomarina soli Y4G10-17 is an obligate aerobe, Gram-negative, motile prokaryote that forms circular colonies and was isolated from saline–alkaline soil collected from a farmland in Ordos.

Gram-negative motile rod-shaped colony-forming obligate aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 27028

KCTC 52381

@ref 20215

Last LPSN update 2025-12-16 10:01:46

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Idiomarinaceae

Genus Aliidiomarina

Species Aliidiomarina soli

Full scientific name Aliidiomarina soli Xu et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement	Confidence
25216	negative	1.2-2.4 µm	0.1-0.3 µm	rod-shaped		polar
125439	negative						96.7

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
25216	3-4 mm	yellow	circular	2 days	LB agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
25216	LB (Luria-Bertani) MEDIUM

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
25216	positive	growth	4-45
25216	positive	optimum	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
25216	positive	optimum	9
25216	positive	growth	6.0-12.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
25216	obligate aerobe
125439	aerobe	97.4

Spore formation

25216

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
25216	NaCl		optimum	4.0-6.0 %
25216	NaCl	positive	growth	1.0-12.0 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25216	30089 ChEBI	acetate	-	assimilation
25216	17128 ChEBI	adipate	+	assimilation
25216	35391 ChEBI	aspartate	-	assimilation
25216	28885 ChEBI	butanol	+	assimilation
25216	16947 ChEBI	citrate	-	assimilation
25216	16919 ChEBI	creatine	+	assimilation
25216	15824 ChEBI	D-fructose	+	assimilation
25216	17634 ChEBI	D-glucose	-	assimilation
25216	16024 ChEBI	D-mannose	-	assimilation
25216	65327 ChEBI	D-xylose	-	assimilation
25216	27689 ChEBI	decanoate	-	assimilation
25216	4853 ChEBI	esculin	-	hydrolysis
25216	16236 ChEBI	ethanol	+	assimilation
25216	17234 ChEBI	glucose	-	fermentation
25216	30849 ChEBI	L-arabinose	-	assimilation
25216	16467 ChEBI	L-arginine	+	assimilation
25216	29985 ChEBI	L-glutamate	-	assimilation
25216	15603 ChEBI	L-leucine	-	assimilation
25216	15589 ChEBI	L-malate	-	assimilation
25216	17295 ChEBI	L-phenylalanine	+	assimilation
25216	17203 ChEBI	L-proline	+	assimilation
25216	62345 ChEBI	L-rhamnose	+	assimilation
25216	17115 ChEBI	L-serine	+	assimilation
25216	17716 ChEBI	lactose	-	assimilation
25216	15792 ChEBI	malonate	-	assimilation
25216	17306 ChEBI	maltose	-	assimilation
25216	17306 ChEBI	maltose	+	assimilation
25216	29864 ChEBI	mannitol	+	assimilation
25216	17790 ChEBI	methanol	-	assimilation
25216	17268 ChEBI	myo-inositol	+	assimilation
25216	506227 ChEBI	N-acetylglucosamine	-	assimilation
25216	17632 ChEBI	nitrate	-	reduction
25216	18401 ChEBI	phenylacetate	-	assimilation
25216	32032 ChEBI	potassium gluconate	-	assimilation
25216	53258 ChEBI	sodium citrate	-	assimilation
25216	17992 ChEBI	sucrose	+	assimilation

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
25216	2676	amoxicillin	10 µg (disc)
25216	28971	ampicillin	10 µg (disc)
25216	28669	bacitracin	0.04 Unit
25216	3393	carbenicillin	100 µg (disc)
25216	3547	cephradine	30 µg (disc)
25216	17698	chloramphenicol	30 µg (disc)
25216	48923	erythromycin	15 µg (disc)
25216	17833	gentamicin	10 µg (disc)
25216	6104	kanamycin	30 µg (disc)
25216	6472	lincomycin	2 µg (disc)
25216	28368	novobiocin		30 µg
25216	18208	penicillin g	10 Unit
25216	59062	polymyxin	300 Unit (disc)
25216	28077	rifampicin	5 µg (disc)
25216	48844	roxithromycin	15 µg (disc)
25216	9215	spectinomycin	100 µg (disc)
25216	17076	streptomycin	10 µg (disc)
25216	27902	tetracycline	30 µg (disc)
25216	45924	trimethoprim	5 µg (disc)
25216	28001	vancomycin	30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
25216	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
25216	acid phosphatase	+	3.1.3.2
25216	alkaline phosphatase	+	3.1.3.1
25216	alpha-chymotrypsin	+	3.4.21.1
25216	alpha-fucosidase	-	3.2.1.51
25216	alpha-galactosidase	-	3.2.1.22
25216	alpha-glucosidase	-	3.2.1.20
25216	alpha-mannosidase	-	3.2.1.24
25216	arginine dihydrolase	+	3.5.3.6
25216	beta-glucosidase	-	3.2.1.21
25216	beta-glucuronidase	-	3.2.1.31
25216	catalase	+	1.11.1.6
25216	cystine arylamidase	-	3.4.11.3
25216	cytochrome oxidase	+	1.9.3.1
25216	esterase (C 4)	+
25216	esterase Lipase (C 8)	+
25216	gelatinase	+
25216	leucine arylamidase	+	3.4.11.1
25216	lipase (C 14)	+
25216	N-acetyl-beta-glucosaminidase	-	3.2.1.52
25216	naphthol-AS-BI-phosphohydrolase	+
25216	trypsin	+	3.4.21.4
25216	urease	+	3.5.1.5
25216	valine arylamidase	+

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	biotin biosynthesis	100	4 of 4
66794	L-lactaldehyde degradation	100	3 of 3
66794	aspartate and asparagine metabolism	100	9 of 9
66794	coenzyme A metabolism	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	ubiquinone biosynthesis	100	7 of 7
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	methylglyoxal degradation	100	5 of 5
66794	quinate degradation	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	suberin monomers biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	lipid A biosynthesis	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	propanol degradation	85.71	6 of 7
66794	photosynthesis	85.71	12 of 14
66794	NAD metabolism	83.33	15 of 18
66794	citric acid cycle	78.57	11 of 14
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	phenylalanine metabolism	76.92	10 of 13
66794	leucine metabolism	76.92	10 of 13
66794	alanine metabolism	75.86	22 of 29
66794	isoleucine metabolism	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	glutamate and glutamine metabolism	75	21 of 28
66794	CMP-KDO biosynthesis	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	proline metabolism	72.73	8 of 11
66794	purine metabolism	72.34	68 of 94
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	glutathione metabolism	71.43	10 of 14
66794	propionate fermentation	70	7 of 10
66794	threonine metabolism	70	7 of 10
66794	histidine metabolism	68.97	20 of 29
66794	pyrimidine metabolism	68.89	31 of 45
66794	lipid metabolism	67.74	21 of 31
66794	arginine metabolism	66.67	16 of 24
66794	methane metabolism	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	tryptophan metabolism	65.79	25 of 38
66794	vitamin B6 metabolism	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	vitamin B1 metabolism	61.54	8 of 13
66794	urea cycle	61.54	8 of 13
66794	vitamin K metabolism	60	3 of 5
66794	cellulose degradation	60	3 of 5
66794	glycolysis	58.82	10 of 17
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	tyrosine metabolism	57.14	8 of 14
66794	lysine metabolism	57.14	24 of 42
66794	polyamine pathway	56.52	13 of 23
66794	cysteine metabolism	55.56	10 of 18
66794	d-mannose degradation	55.56	5 of 9
66794	ethanol fermentation	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	cyclohexanol degradation	50	2 of 4
66794	heme metabolism	50	7 of 14
66794	ketogluconate metabolism	50	4 of 8
66794	glycogen biosynthesis	50	2 of 4
66794	butanoate fermentation	50	2 of 4
66794	pentose phosphate pathway	45.45	5 of 11
66794	d-xylose degradation	45.45	5 of 11
66794	arachidonic acid metabolism	44.44	8 of 18
66794	methionine metabolism	42.31	11 of 26
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	oxidative phosphorylation	40.66	37 of 91
66794	Entner Doudoroff pathway	40	4 of 10
66794	glycine betaine biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	phenylacetate degradation (aerobic)	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	lipoate biosynthesis	40	2 of 5
66794	sulfate reduction	38.46	5 of 13
66794	ascorbate metabolism	36.36	8 of 22
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	enterobactin biosynthesis	33.33	1 of 3
66794	3-phenylpropionate degradation	33.33	5 of 15
66794	sphingosine metabolism	33.33	2 of 6
66794	allantoin degradation	33.33	3 of 9
66794	degradation of pentoses	32.14	9 of 28
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	degradation of sugar alcohols	31.25	5 of 16
66794	coenzyme M biosynthesis	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	reductive acetyl coenzyme A pathway	28.57	2 of 7
66794	degradation of hexoses	27.78	5 of 18
66794	carnitine metabolism	25	2 of 8
66794	lactate fermentation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	dTDPLrhamnose biosynthesis	25	2 of 8
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	nitrate assimilation	22.22	2 of 9
66794	4-hydroxymandelate degradation	22.22	2 of 9

Fatty acid profile

Metadata FA analysis

@ref

25216

Fatty acid	Percentage
C15:0 iso	30.8
C17:0 iso	18.8
C17:1 iso ω9c / C16:0 10-methyl	13.9
C15:1 iso F	8.7
C11:0 iso 3OH	6.1
C15:0 iso 2OH / C16:1ω7c	5.7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	-
#Environmental	#Terrestrial	#Soil
#Condition	#Alkaline	-
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
25216	saline–alkaline soil collected from a farmland in Ordos	Ordos, Inner Mongolia, northern China	China	CHN	Asia	40	107 40/107

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM398697v1 assembly for Aliidiomarina soli Y4G10-17	contig	GCA_003986975	1928574.3	2890070066	1928574	75.35

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
25216	Aliidiomarina soli strain Y4G10-17 16S ribosomal RNA gene, partial sequence	KX355166	1351	1928574
25216	Aliidiomarina soli strain Y4G10-17 16S ribosomal RNA gene, partial sequence	KX548071	1513	1928574
25216	Aliidiomarina soli strain Y4G10-17 16S ribosomal RNA gene, partial sequence	KX548072	1512	1928574
25216	Aliidiomarina soli strain Y4G10-17 16S ribosomal RNA gene, partial sequence	KX548073	1513	1928574
25216	Aliidiomarina soli strain Y4G10-17 16S ribosomal RNA gene, partial sequence	KX548074	1151	1928574
25216	Aliidiomarina soli strain Y4G10-17 16S ribosomal RNA gene, partial sequence	KX548075	1512	1928574
25216	Aliidiomarina soli strain Y4G10-17 16S ribosomal RNA gene, partial sequence	KX548076	1513	1928574
25216	Aliidiomarina soli strain Y4G10-17 16S ribosomal RNA gene, partial sequence	KX548077	1512	1928574

GC content

@ref	GC-content (mol%)	Method
25216	49.3	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aliidiomarina soli Y4G10-17
NCBI: GCA_003986975

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	89.70	no
125439	motility	BacteriaNetⓘ	yes	78.40	no
125439	gram_stain	BacteriaNetⓘ	negative	96.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	97.40	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aliidiomarina soli sp. nov., isolated from saline-alkaline soil.	Xu L, Sun JQ, Wang LJ, Liu XZ, Ji YY, Shao ZQ, Wu XL	Int J Syst Evol Microbiol	10.1099/ijsem.0.001709	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25216	L. S. Xu, J. Q.,Wang, L. J.,Liu, X. Z.,Ji, Y. Y.,Shao, Z. Q.,Wu, X. L.: Aliidiomarina soli sp. nov., isolated from saline-alkaline soil. IJSEM 67: 724 - 728 2017 ( DOI 10.1099/ijsem.0.001709 , PubMed 27926823 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aliidiomarina soli (CGMCC 1.15759, KCTC 52381, Y4G10-17)

Name and taxonomic classification