Strain identifier

BacDive ID: 133362

Type strain: Yes

Species: Lutibacter litorisediminis

Strain Designation: OITF-20

Strain history: <- Jung-Hoon YOON, Sungkyunkwan Univ.

NCBI tax ID(s): 1886597 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 8.1 (current version)

General

@ref: 25226

BacDive-ID: 133362

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, colony-forming

description: Lutibacter litorisediminis OITF-20 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from the tidal flat in Oido, an island of South Korea, in the Yellow Sea.

NCBI tax id

  • NCBI tax id: 1886597
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Jung-Hoon YOON, Sungkyunkwan Univ.

doi: 10.13145/bacdive133362.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Lutibacter
  • species: Lutibacter litorisediminis
  • full scientific name: Lutibacter litorisediminis Park et al. 2017

@ref: 25226

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Lutibacter

species: Lutibacter litorisediminis

strain designation: OITF-20

type strain: yes

Morphology

cell morphology

  • @ref: 25226
  • gram stain: negative
  • cell length: 0.5-10.0 µm
  • cell width: 0.2-0.4 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 25226
  • colony size: 0.5-1.0 mm
  • colony color: vivid yellow
  • colony shape: circular
  • incubation period: 3 days
  • medium used: MA

pigmentation

@refproductionname
25226yesCarotenoids
25226noFlexirubin-type

Culture and growth conditions

culture medium

  • @ref: 25226
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
25226positiveoptimum25mesophilic
25226positivegrowth4-25
25226nogrowth28mesophilic
67771positivegrowth25mesophilic

culture pH

@refabilitytypepH
25226positiveoptimum7.0-8.0
25226positivegrowth6
25226nogrowth5.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
25226aerobe
67771aerobe

halophily

@refsalttested relationconcentrationgrowth
25226NaCloptimum1.0-2.0 %(w/v)
25226NaClgrowth1.0-4.0 %(w/v)positive

observation

  • @ref: 25226
  • observation: greater than 10 µm in length

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2522630089acetate-carbon source
2522616150benzoate-carbon source
25226casein-hydrolysis
2522616947citrate-carbon source
2522615740formate-carbon source
252265291gelatin-hydrolysis
2522617368hypoxanthine-hydrolysis
2522629985L-glutamate-carbon source
2522615589L-malate-carbon source
2522617895L-tyrosine-hydrolysis
2522617632nitrate-reduction
2522615361pyruvate-carbon source
2522628017starch-hydrolysis
2522630031succinate-carbon source
2522653426tween 80-hydrolysis
2522616199urea-hydrolysis
2522615318xanthine-hydrolysis
2522617057cellobiose+carbon source
2522615824D-fructose+carbon source
2522612936D-galactose+carbon source
2522617634D-glucose+carbon source
2522616024D-mannose+carbon source
2522665327D-xylose+carbon source
252264853esculin+hydrolysis
2522630849L-arabinose+carbon source
2522617306maltose+carbon source
2522617814salicin+carbon source
2522617992sucrose+carbon source
2522627082trehalose+carbon source

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.
2522628971ampicillinyesyes10 µg (disc)
252263393carbenicillinyesyes100 µg (disc)
25226124991cefalotinyesyes30 µg (disc)
2522617698chloramphenicolyesyes100 µg (disc)
2522617833gentamicinyesno30 µg (disc)
252266104kanamycinyesno30 µg (disc)
252266472lincomycinyesyes15 µg (disc)
252267507neomycinyesno30 µg (disc)
2522628368novobiocinyesno5 µg (disc)
2522616869oleandomycinyesyes15 µg (disc)
2522618208penicillin gyesyes20 Unit (disc)
252268309polymyxin byesno100 Unit (disc)
2522617076streptomycinyesno50 µg (disc)
2522627902tetracyclineyesyes30 µg (disc)

enzymes

@refvalueactivityec
25226acid phosphatase+3.1.3.2
25226alkaline phosphatase+3.1.3.1
25226alpha-chymotrypsin-3.4.21.1
25226alpha-fucosidase-3.2.1.51
25226alpha-galactosidase+3.2.1.22
25226alpha-glucosidase-3.2.1.20
25226alpha-mannosidase-3.2.1.24
25226beta-galactosidase-3.2.1.23
25226beta-glucosidase+3.2.1.21
25226beta-glucuronidase-3.2.1.31
25226catalase+1.11.1.6
25226cystine arylamidase-3.4.11.3
25226cytochrome oxidase+1.9.3.1
25226esterase (C 4)-
25226esterase Lipase (C 8)-
25226leucine arylamidase+3.4.11.1
25226lipase (C 14)-
25226N-acetyl-beta-glucosaminidase+3.2.1.52
25226naphthol-AS-BI-phosphohydrolase+
25226trypsin-3.4.21.4
25226valine arylamidase-

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    25226C15:0 anteiso5.8
    25226C13:0 3OH / C15:1 isoH1.6
    25226C15:0 3OH4.3
    25226C15:1ω6c21.2
    25226C16:0 3OH2
    25226C16:1ω7c / C16:1ω6c2.9
    25226C17:1ω6c3.5
    25226C14:0 iso1.1
    25226C15:0 iso16.3
    25226C15:0 iso 3OH22.3
    25226C15:1 iso G4.6
    25226C16:0 iso 3OH4.2
    25226C17:0 iso 3OH3.6
  • type of FA analysis: whole cell analysis
  • incubation medium: Marine Agar (MA)
  • agar/liquid: agar
  • incubation temperature: 25
  • incubation time: 2
  • software version: Sherlock 6.2B
  • library/peak naming table: TSBA 6
  • system: MIS MIDI
  • method/protocol: Sasser 1990
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
25226the tidal flat in Oido, an island of South Korea, in the Yellow SeaOido in the Yellow Sea, South KoreaRepublic of KoreaKORAsia
67771From mud flatOido IslandRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Terrestrial#Tidal flat

taxonmaps

  • @ref: 69479
  • File name: preview.99_17805.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_333;96_2985;97_10235;98_12563;99_17805&stattab=map
  • Last taxonomy: Lutibacter litorisediminis
  • 16S sequence: KX668183
  • Sequence Identity:
  • Total samples: 1296
  • soil counts: 31
  • aquatic counts: 1253
  • animal counts: 11
  • plant counts: 1

Sequence information

16S sequences

  • @ref: 25226
  • description: 16S rRNA gene sequences
  • accession: KX668183
  • length: 1438
  • database: ena
  • NCBI tax ID: 1886597

GC content

  • @ref: 25226
  • GC-content: 31.1
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 25226

culture collection no.: KCTC 52501, NBRC 112458

literature

  • topic: Phylogeny
  • Pubmed-ID: 27902283
  • title: Lutibacter litorisediminis sp. nov., isolated from a tidal flat.
  • authors: Park S, Yoon SY, Ha MJ, Jung YT, Yoon JH
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001662
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25226S. Y. Park, S. Y.,Ha, M. J.,Jung, Y. T.,Yoon, J. H.Lutibacter litorisediminis sp. nov., isolated from a tidal flat10.1099/ijsem.0.001662IJSEM 67: 583-588 201727902283
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/