Name: Lutibacter litorisediminis OITF-20
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133362

Type strain:

Species: Lutibacter litorisediminis

Strain Designation: OITF-20

Culture col. no.: KCTC 52501, NBRC 112458

Strain history: <- Jung-Hoon YOON, Sungkyunkwan Univ.

NCBI tax ID(s): 1886597 (species)

Section

Lutibacter litorisediminis OITF-20 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from the tidal flat in Oido, an island of South Korea, in the Yellow Sea.

colony-forming
Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Lutibacter*
	Species	**Lutibacter litorisediminis**
	Full Scientific Name (LPSN)	Lutibacter litorisediminis Park et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #25226]	Gram stain	negative

[Ref.: #25226]	Cell length	0.5-10.0 µm

[Ref.: #25226]	Cell width	0.2-0.4 µm

[Ref.: #25226]	Cell shape	rod-shaped

[Ref.: #25226]	Motility	no

[Ref.: #25226]	Colony size	0.5-1.0 mm
[Ref.: #25226]	Colony color	vivid yellow
[Ref.: #25226]	Colony shape	circular
[Ref.: #25226]	Incubation period	3 days
[Ref.: #25226]	Cultivation medium used	MA

[Ref.: #25226]	Pigment production	yes
[Ref.: #25226]	Pigment name	Carotenoids
[Ref.: #25226]	Pigment production	no
[Ref.: #25226]	Pigment name	Flexirubin-type

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25226]

Culture medium

Marine agar (MA)

[Ref.: #25226]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #25226]		optimum	25 °C
[Ref.: #25226]		growth	4-25 °C
[Ref.: #25226]	no	growth	28 °C
[Ref.: #67771]		growth	25 °C

[Ref.: #25226]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	Kind of pH		pH
[Ref.: #25226]		optimum	7.0-8.0
[Ref.: #25226]		growth	6
[Ref.: #25226]	no	growth	5.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25226]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25226]		NaCl		optimum	1.0-2.0	%(w/v)
[Ref.: #25226]		NaCl		growth	1.0-4.0	%(w/v)

[Ref.: #25226]

Observation

greater than 10 µm in length

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25226]	acetate ChEBI	-	carbon source
[Ref.: #25226]	benzoate ChEBI	-	carbon source
[Ref.: #25226]	casein	-	hydrolysis
[Ref.: #25226]	cellobiose ChEBI	+	carbon source
[Ref.: #25226]	citrate ChEBI	-	carbon source
[Ref.: #25226]	D-fructose ChEBI	+	carbon source
[Ref.: #25226]	D-galactose ChEBI	+	carbon source
[Ref.: #25226]	D-glucose ChEBI	+	carbon source
[Ref.: #25226]	D-mannose ChEBI	+	carbon source
[Ref.: #25226]	D-xylose ChEBI	+	carbon source
[Ref.: #25226]	esculin ChEBI	+	hydrolysis
[Ref.: #25226]	formate ChEBI	-	carbon source
[Ref.: #25226]	gelatin ChEBI	-	hydrolysis
[Ref.: #25226]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #25226]	L-arabinose ChEBI	+	carbon source
[Ref.: #25226]	L-glutamate ChEBI	-	carbon source
[Ref.: #25226]	L-malate ChEBI	-	carbon source
[Ref.: #25226]	L-tyrosine ChEBI	-	hydrolysis
[Ref.: #25226]	maltose ChEBI	+	carbon source
[Ref.: #25226]	nitrate ChEBI	-	reduction
[Ref.: #25226]	pyruvate ChEBI	-	carbon source
[Ref.: #25226]	salicin ChEBI	+	carbon source
[Ref.: #25226]	starch ChEBI	-	hydrolysis
[Ref.: #25226]	succinate ChEBI	-	carbon source
[Ref.: #25226]	sucrose ChEBI	+	carbon source
[Ref.: #25226]	trehalose ChEBI	+	carbon source
[Ref.: #25226]	tween 80 ChEBI	-	hydrolysis
[Ref.: #25226]	urea ChEBI	-	hydrolysis
[Ref.: #25226]	xanthine ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #25226]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #25226]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #25226]	cefalotin ChEBI	yes	30	µg (disc)
[Ref.: #25226]	chloramphenicol ChEBI	yes	100	µg (disc)
[Ref.: #25226]	gentamicin ChEBI	no	30	µg (disc)
[Ref.: #25226]	kanamycin ChEBI	no	30	µg (disc)
[Ref.: #25226]	lincomycin ChEBI	yes	15	µg (disc)
[Ref.: #25226]	neomycin ChEBI	no	30	µg (disc)
[Ref.: #25226]	novobiocin ChEBI	no	5	µg (disc)
[Ref.: #25226]	oleandomycin ChEBI	yes	15	µg (disc)
[Ref.: #25226]	penicillin g ChEBI	yes	20	Unit (disc)
[Ref.: #25226]	polymyxin b ChEBI	no	100	Unit (disc)
[Ref.: #25226]	streptomycin ChEBI	no	50	µg (disc)
[Ref.: #25226]	tetracycline ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #25226]	acid phosphatase	+	3.1.3.2
[Ref.: #25226]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25226]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25226]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25226]	alpha-galactosidase	+	3.2.1.22
[Ref.: #25226]	alpha-glucosidase	-	3.2.1.20
[Ref.: #25226]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25226]	beta-galactosidase	-	3.2.1.23
[Ref.: #25226]	beta-glucosidase	+	3.2.1.21
[Ref.: #25226]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25226]	catalase	+	1.11.1.6
[Ref.: #25226]	cystine arylamidase	-	3.4.11.3
[Ref.: #25226]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25226]	esterase (C 4)	-
[Ref.: #25226]	esterase Lipase (C 8)	-
[Ref.: #25226]	leucine arylamidase	+	3.4.11.1
[Ref.: #25226]	lipase (C 14)	-
[Ref.: #25226]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #25226]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25226]	trypsin	-	3.4.21.4
[Ref.: #25226]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #25226]

Fatty acid	Percentage
C15:0 iso 3OH	22.3
C15:1ω6c	21.2
C15:0 iso	16.3
C15:0 anteiso	5.8
C15:1 iso G	4.6
C15:0 3OH	4.3
C16:0 iso 3OH	4.2
C17:0 iso 3OH	3.6
C17:1ω6c	3.5
C16:1ω7c / C16:1ω6c	2.9
C16:0 3OH	2
C13:0 3OH / C15:1 isoH	1.6
C14:0 iso	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25226]	Sample type/isolated from	the tidal flat in Oido, an island of South Korea, in the Yellow Sea
[Ref.: #25226]	Geographic location (country and/or sea, region)	Oido in the Yellow Sea, South Korea
[Ref.: #25226]	Country	Republic of Korea
[Ref.: #25226]	Country ISO 3 Code	KOR
[Ref.: #25226]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From mud flat
[Ref.: #67771]	Geographic location (country and/or sea, region)	Oido Island
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Tidal flat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KX668183 (>99% sequence identity) for Lutibacter litorisediminis from Microbeatlas

Aquatic Samples	1253
Soil Samples	31
Animal Samples	11
Plant Samples	1
Total Samples	1296

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25226]	16S rRNA gene sequences	KX668183	1438	ENA	1886597 tax ID

[Ref.: #25226]

GC-content

31.1 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #25226]

Culture collection no.

KCTC 52501, NBRC 112458

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lutibacter litorisediminis sp. nov., isolated from a tidal flat.	Park S, Yoon SY, Ha MJ, Jung YT, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001662	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25226

S. Y. Park, S. Y.,Ha, M. J.,Jung, Y. T.,Yoon, J. H.: Lutibacter litorisediminis sp. nov., isolated from a tidal flat. IJSEM 67: 583 - 588 2017 ( DOI 10.1099/ijsem.0.001662 , PubMed 27902283 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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