Strain identifier

BacDive ID: 133273

Type strain: Yes

Species: Shewanella inventionis

Strain Designation: KX27

NCBI tax ID(s): 1738770 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 8.1 (current version)

General

@ref: 25136

BacDive-ID: 133273

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Shewanella inventionis KX27 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from deep-sea sediment .

NCBI tax id

  • NCBI tax id: 1738770
  • Matching level: species

doi: 10.13145/bacdive133273.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Shewanellaceae
  • genus: Shewanella
  • species: Shewanella inventionis
  • full scientific name: Shewanella inventionis Wang and Sun 2016

@ref: 25136

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Shewanellaceae

genus: Shewanella

species: Shewanella inventionis

strain designation: KX27

type strain: yes

Morphology

cell morphology

  • @ref: 25136
  • gram stain: negative
  • cell length: 1.5-3.5 µm
  • cell width: 0.5-0.8 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: monotrichous, polar

colony morphology

  • @ref: 25136
  • colony size: 2 mm
  • colony color: non-pigmented to slightly pinkish
  • colony shape: circular
  • incubation period: 3 days
  • medium used: 2216E agar

Culture and growth conditions

culture medium

  • @ref: 25136
  • name: 2216E agar
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
25136positivegrowth4.0-37.0
25136positiveoptimum28mesophilic
25136maximum37mesophilic
25136minimum4psychrophilic
25136nogrowth40thermophilic

culture pH

@refabilitytypepHPH range
25136positivegrowth6.0-9.0alkaliphile
25136positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 25136
  • oxygen tolerance: aerobe

halophily

@refsalttested relationconcentrationgrowth
25136NaCloptimum2 %
25136NaClgrowth0.0-5.0 %(w/v)positive
25136NaClgrowth6 %(w/v)no

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2513622599arabinose-assimilation
2513616947citrate-assimilation
2513627689decanoate-assimilation
251365291gelatin-hydrolysis
2513617234glucose-fermentation
2513617234glucose-assimilation
2513624996lactate-assimilation
2513617306maltose-assimilation
25136506227N-acetylglucosamine-assimilation
2513632032potassium gluconate-assimilation
2513628017starch-hydrolysis
2513627897tryptophan-energy source
2513625115malate+assimilation
2513629864mannitol+assimilation
2513617632nitrate+reduction
2513653424tween 20+hydrolysis
2513653423tween 40+hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantis sensitive
251368232piperacillinyesyes
251367809oxacillinyesyes
251367507neomycinyesyes
2513650694minocyclineyesyes
2513631845midecamycinyesyes
2513627902tetracyclineyesyes
2513617833gentamicinyesyes
2513617698chloramphenicolyesyes
251366104kanamycinyesyes
2513648923erythromycinyesyes
251362637amikacinyesyes
2513618208penicillin gyesyes
25136124991cefalotinyesyes
2513628001vancomycinyesyes
251363515cefuroximeyesyes
25136100246norfloxacinyesyes
251368309polymyxin byesyes
251363393carbenicillinyesyes
2513629007ceftriaxoneyesyes
251363508ceftazidimeyesyes
2513650845doxycyclineyesyes
251369332sulfamethoxazoleyesyes
251365195furazolidoneyesyes
251363745clindamycinyesyes
251367731ofloxacinyesyes
2513628971ampicillinyesyes
25136100241ciprofloxacinyesyes
251363493cefoperazoneyesyes
251363547cephradineyesyes

metabolite production

@refChebi-IDmetaboliteproduction
2513616136hydrogen sulfideno
2513635581indoleno

metabolite tests

  • @ref: 25136
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
25136acid phosphatase+3.1.3.2
25136alkaline phosphatase+3.1.3.1
25136alpha-chymotrypsin+3.4.21.1
25136alpha-fucosidase-3.2.1.51
25136alpha-galactosidase+3.2.1.22
25136alpha-glucosidase+3.2.1.20
25136alpha-mannosidase-3.2.1.24
25136arginine dihydrolase-3.5.3.6
25136beta-galactosidase-3.2.1.23
25136beta-glucosidase-3.2.1.21
25136beta-glucuronidase-3.2.1.31
25136catalase+1.11.1.6
25136cystine arylamidase-3.4.11.3
25136cytochrome oxidase+1.9.3.1
25136esterase (C 4)-
25136esterase Lipase (C 8)+
25136leucine arylamidase+3.4.11.1
25136lipase (C 14)-
25136N-acetyl-beta-glucosaminidase-3.2.1.52
25136naphthol-AS-BI-phosphohydrolase+
25136trypsin-3.4.21.4
25136tryptophan deaminase-4.1.99.1
25136urease-3.5.1.5
25136valine arylamidase+

Isolation, sampling and environmental information

isolation

  • @ref: 25136
  • sample type: deep-sea sediment (depth of 1011 m)
  • geographic location: Iheya Ridge in the Okinawa Trough
  • latitude: 27
  • longitude: 126.888
  • enrichment culture: marine 2216 agar
  • enrichment culture duration: 5 days
  • enrichment culture temperature: 28
  • isolation procedure: streak-plate method

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

Sequence information

16S sequences

  • @ref: 25136
  • description: Shewanella sp. KX27 16S ribosomal RNA gene, partial sequence
  • accession: KT781407
  • length: 1504
  • database: nuccore
  • NCBI tax ID: 1738770

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Shewanella inventionis CGMCC 1.15339GCA_014641855scaffoldncbi1738770
66792Shewanella inventionis strain CGMCC 1.153391738770.3wgspatric1738770
66792Shewanella inventionis KCTC 42807GCA_023283595contigncbi1738770

GC content

  • @ref: 25136
  • GC-content: 43
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedyes80.224yes
gram-positiveno98.628yes
anaerobicno97.665yes
aerobicyes77.489yes
halophileno59.592no
spore-formingno95.975no
glucose-utilyes90.391no
thermophileno99.095no
motileyes90.908no
glucose-fermentno82.008yes

External links

@ref: 25136

culture collection no.: KCTC 42807, CGMCC 1.15339

literature

  • topic: Phylogeny
  • Pubmed-ID: 27562367
  • title: Shewanella inventionis sp. nov., isolated from deep-sea sediment.
  • authors: Wang MQ, Sun L
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001450
  • year: 2016
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, Phosphatidylglycerols/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Shewanella/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25136M. Q. S. Wang, L.Shewanella inventionis sp. nov., isolated from deep-sea sediment10.1099/ijsem.0.001450IJSEM 66: 4947-4953 201627562367
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes